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Federal
Raw Sequences of 17 Aspergillus Genomes from Ethiopia
Department of Agriculture —
Raw genome sequencing data of 17 isolates of Aspergillus flavus and Aspergillus parasiticus collected from peanuts from Ethiopia. These isolates were selected as... -
Federal
Leptinotarsa decemlineata genome annotations v0.5.3
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents... -
Federal
Code from: Aspergillus flavus expression database (AFED), a comprehensive resource for Aspergillus flavus gene expression profiling
Department of Agriculture —
Public RNA-Seq data was used to quantify gene expression abundance for 604 Aspergillus flavus samples from 52 experiments (bioprojects). Using abundance data, we... -
Federal
Data from: Estimation of pool construction and technical error
Department of Agriculture —
Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of... -
Federal
Evaluating accuracy of DNA pool construction based on white blood cell counts
Department of Agriculture —
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal... -
Federal
Agrilus planipennis community manual annotations
Department of Agriculture —
Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction.... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
Data from: Haplotype-resolved genome assembly of ‘Manhattan’ perennial ryegrass (<i>Lolium </i><i>perenne</i> L.) and characterization of drought responsive late embryogenesis abundant genes
Department of Agriculture —
Genome sequence and annotation files of Lpman haplotype 1 and haplotype 2 genome assembly reported in the manuscript "Haplotype-resolved genome assembly of... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Data from: Genetic variation among 481 diverse soybean accessions
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Functional annotation for 15 diverse arthropod genomes
Department of Agriculture —
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,... -
Federal
Halyomorpha halys Official Gene Set v1.2
Department of Agriculture —
This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1... -
Federal
Leptinotarsa decemlineata Official Gene set v1.2
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata... -
Federal
Data from: Characterization of Adult Transcriptomes from the Omnivorous Lady Beetle Coleomegilla maculata Fed Pollen or Insect Egg Diet
Department of Agriculture —
Expressed genes from two individual sibling specimens of Coleomegilla maculata (Coleoptera: Coccinellidae). One individual was fed only insect eggs as an adult, and... -
Federal
Data from: Legacy genetics of Arachis cardenasii in the peanut crop - v2
Department of Agriculture —
[Note: This version supersedes version 1: https://doi.org/10.15482/USDA.ADC/1520889 Changes in version 2: A new Dataset was added - DataSet1-CardAlleles-iii.xlsx... -
Federal
Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research
Department of Agriculture —
This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified... -
Federal
Data from: Microbiota of maize kernels as influenced by Aspergillus flavus infection in susceptible and resistant inbreds
Department of Agriculture —
This repository contains the code and data to reproduce the figures and analyses in the paper "Microbiota of maize kernels as influenced by Aspergillus flavus... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening... -
Federal
Genes of viral origin in the Fopius arisanus genome
Department of Agriculture —
Fopius arisanus (Sonan) is a braconid wasp (subfamily Opiinae) and biological control agent of a broad range of tephritid fruit fly species, including the global...