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Federal
Evaluating accuracy of DNA pool construction based on white blood cell counts
Department of Agriculture —
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Agrilus planipennis community manual annotations
Department of Agriculture —
Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction.... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening... -
Federal
Data from: Estimation of pool construction and technical error
Department of Agriculture —
Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of... -
Federal
Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana
Department of Agriculture —
The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al.,... -
Federal
Data from: Genetic variation among 481 diverse soybean accessions
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,...