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38 datasets found
  • Federal

    Vector Alignment Search Tool (VAST)

    U.S. Department of Health & Human Services —

    A computer algorithm that identifies similar protein 3-dimensional structures. Structure neighbors for every structure in MMDB are pre-computed and accessible via...
  • Federal

    Database of Genomic Structural Variation (dbVar)

    U.S. Department of Health & Human Services —

    Database of Genomic Structural Variation (dbVar) is NCBI's database of human genomic Structural Variation — large variants >50 bp including insertions, deletions,...
  • Federal

    SPDI Variation Service

    U.S. Department of Health & Human Services —

    This genetic variation services interconvert and transform short genetic variants between HGVS expressions, VCF format, and the new SPDI (Sequence Position Deletion...
  • Federal

    Phenotype-Genotype Integrator (PheGenI)

    U.S. Department of Health & Human Services —

    Supports finding human phenotype/genotype relationships with queries by phenotype, chromosome location, gene, and SNP identifiers. Currently includes information from...
  • Federal

    MAGPIE (Map Assisted Generation of Procedure and Intervention Encoding) [DEMO]

    U.S. Department of Health & Human Services —

    MAGPIE is an interactive tool to help users (e.g., professional coders, researchers, clinicians) find SNOMED CT and ICD-10-PCS codes for medical procedures and...
  • Federal

    RxMix

    U.S. Department of Health & Human Services —

    An interface for building applications that allows users to combine functions of various NLM drug APIs, including the RxNorm, RxClass, RxTerms, and NDF-RT APIs....
  • Federal

    Cn3D

    U.S. Department of Health & Human Services —

    A stand-alone application for viewing 3-dimensional structures from NCBI Entrez retrieval service. Runs on Windows, Macintosh, and UNIX and can be configured to...
  • Federal

    Protein Clusters

    U.S. Department of Health & Human Services —

    A collection of Reference Sequence (RefSeq) proteins, from the complete genomes of prokaryotes, plasmids, and organelles, that have been grouped and annotated based...
  • Federal

    CDTree

    U.S. Department of Health & Human Services —

    CDTree is a stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update...
  • Federal

    Open Reading Frame Finder (ORF Finder)

    U.S. Department of Health & Human Services —

    A graphical analysis tool that finds all open reading frames in a user's sequence or in a sequence already in the database.
  • Federal

    IgBLAST

    U.S. Department of Health & Human Services —

    IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin as well as T cell receptor (TR) sequences. It uses BLAST search algorithm.
  • Federal

    Sequence Set Browser

    U.S. Department of Health & Human Services —

    This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete...
  • Federal

    Sequence Read Archive (SRA)

    U.S. Department of Health & Human Services —

    The Sequence Read Archive (SRA) stores sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®,...
  • Federal

    GRAF (Genetic Relationship and Fingerprinting)

    U.S. Department of Health & Human Services —

    GRAF (Genetic Relationship and Fingerprinting) is a C++ program that quickly finds the closely related subjects, infers subject ancestry, determines subject sexes...
  • Federal

    Journal Article Tag Suite (JATS)

    U.S. Department of Health & Human Services —

    Journal Article Tag Suite (JATS) is an application of NISO Z39.96.2019, which defines a set of XML elements and attributes for describing the textual and graphical...
  • Federal

    UCUM-LHC

    U.S. Department of Health & Human Services —

    A JavaScript package that can be included in webpages or programs and used for validating and converting unit expressions from the Unified Code for Units of Measure...
  • Federal

    Gene

    U.S. Department of Health & Human Services —

    Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes,...
  • Federal

    VecScreen

    U.S. Department of Health & Human Services —

    Quickly identifying segments of a nucleic acid sequence that may be of vector origin.
38 datasets found

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