36 datasets found
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Federal
Data from: Genetic variation among 481 diverse soybean accessions
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana
Department of Agriculture —
The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al.,... -
Federal
Data from: Genotypic characterization of the U.S. peanut core collection
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Data from: Agile Genetics: Single gene resolution without the fuss
Department of Agriculture —
These files are 250bp Illumina MiSeq paired-end sequencing reads in fastq format. Libraries were prepared from DNA fragments amplified from tomato bulk (heterogenous)... -
Federal
Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research
Department of Agriculture —
This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified... -
Federal
Data from: Impacts of gene duplication in the evolution of symbiotic root nodule symbiosis
Department of Agriculture —
The emerging consensus regarding the origin of root nodule symbiosis (RNS), based on modeling of trait gain and loss across approximately 13,000 species within the... -
Federal
Leptinotarsa decemlineata genome annotations v0.5.3
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents... -
Federal
Leptinotarsa decemlineata genome assembly 1.0
Department of Agriculture —
The Baylor College of Medicine recently sequenced and annotated the Leptinotarsa decemlineata genome as part of the i5k pilot project. This dataset presents the... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,... -
Federal
Data from polishCLR: Example input genome assemblies
Department of Agriculture —
[ NOTE - Data files added 2022-11-01: Test long reads - test.1.filtered.bam_.gz Test short reads R1 - testpolish_R1.fastq Test short reads R2 - testpolish_R2.fastq... -
Federal
Evaluating accuracy of DNA pool construction based on white blood cell counts
Department of Agriculture —
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal... -
Federal
Data from: Haplotype-resolved genome assembly of ‘Manhattan’ perennial ryegrass (<i>Lolium </i><i>perenne</i> L.) and characterization of drought responsive late embryogenesis abundant genes
Department of Agriculture —
Genome sequence and annotation files of Lpman haplotype 1 and haplotype 2 genome assembly reported in the manuscript "Haplotype-resolved genome assembly of... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Data from: Complex Reticulation in Backbone Subfamily Relationships in Leguminosae
Department of Agriculture —
Contradictory lines of evidence have made it difficult to resolve the phylogenetic history of the legume diversification era; this is true for the backbone topology,... -
Federal
Agrilus planipennis community manual annotations
Department of Agriculture —
Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction.... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i>
Department of Agriculture —
Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-... -
Federal
Data from: A haplotype-resolved genome assembly of hexaploid Kentucky-31 tall fescue (<i>Lolium arundinaceum</i>)
Department of Agriculture —
Genome sequence with structural and functional annotation files of LoarK31 haplotype 1 and haplotype 2 genome assembly reported in the manuscript "A haplotype-...
36 datasets found