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Federal
Annual ground-based photographs taken at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1996-ongoing
Department of Agriculture —
This data package contains a list of ground-based photographs taken at fifteen Net Primary Production (NPP) study sites at the Jornada Basin LTER. Sites were selected... -
Federal
Data and code from: Cultivation and dynamic cropping processes impart land-cover heterogeneity within agroecosystems: a metrics-based case study in the Yazoo-Mississippi Delta (USA)
Department of Agriculture —
This dataset contains data and code from the manuscript:Heintzman, L.J., McIntyre, N.E., Langendoen, E.J., & Read, Q.D. (2024). Cultivation and dynamic cropping... -
Federal
Data from: "Genome report - chromosome-scale genome assembly of the Olive fly Bactrocera oleae (Diptera-Tephritidae)"
Department of Agriculture —
The olive fruit fly, Bactrocera oleae (Rossi) (Diptera: Tephritidae), is a specialist of fruits of the genus Olea and is a major pest of commercial olives due to... -
Federal
Data from: New Record of the Pavement Ant, <i>Tetramorium immigrans</i> (Hymenoptera: Formicidae), in South Dakota with notes on its thermal tolerance and geographic distribution
Department of Agriculture —
Data files for manuscript titled "New Record of the Pavement Ant, Tetramorium immigrans (Hymenoptera: Formicidae), in South Dakota with Notes on its Thermal Tolerance... -
Federal
Data, code, and outputs for: Holistic systems thinking underpins Vermont soil health practitioners’ preferences and beliefs
Department of Agriculture —
Methodology for data collection and analysis is reported in: Hammond Wagner, C.R., White, A., Darby, H., Ewing, P., Faulkner, J., Fisher, B., Galford, G., Horner, C.,... -
Federal
Code from: Aspergillus flavus expression database (AFED), a comprehensive resource for Aspergillus flavus gene expression profiling
Department of Agriculture —
Public RNA-Seq data was used to quantify gene expression abundance for 604 Aspergillus flavus samples from 52 experiments (bioprojects). Using abundance data, we... -
Federal
ConvertCufflinksToExcel
Department of Agriculture —
This program converts several Cufflinks output files into easily readable Microsoft Excel tables using Apache's POI library. Only the "cuffdiff" output format... -
Federal
Data from: Tephritid fruit fly gut bacterial population and community dynamics following adult emergence
Department of Agriculture —
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit... -
Federal
USDA ARS Maize Modelling Dataset, Greeley, Colorado
Department of Agriculture —
A Modelling dataset containing a DSSAT cultivar file, AgMIPS platform dome code and USDA ARS LIRF drip irrigated field experiment in Greeley, Colorado average Maize... -
Federal
Data and code from: Topographic wetness index as a proxy for soil moisture in a hillslope catena: flow algorithms and map generalization
Department of Agriculture —
This dataset contains all data and code necessary to reproduce the analysis presented in the manuscript: Winzeler, H.E., Owens, P.R., Read Q.D.., Libohova, Z.,... -
Federal
Code from: Fast and robust curve skeletonization for real-world elongated objects
Department of Agriculture —
This record contains C++ code and a Docker release for performing curve skeletonization of objects, which have a voxel representation. Curve skeletonization is used... -
Federal
Data from: The Biology of IncI2 Plasmids Shown by Whole-Plasmid Multi-Locus Sequence Typing
Department of Agriculture —
DNA sequences of each allele for 165 loci found in a population of 147 fully sequenced IncI2 plasmids with allelic identifiers.Data is based on whole-genome sequences... -
Federal
Soil Dynamics Research for Greenhouse gas Reduction through Agricultural Carbon Enhancement network in Auburn, Alabama
Department of Agriculture —
Soil Dynamics Research for Greenhouse gas Reduction through Agricultural Carbon Enhancement network in Auburn, Alabama This study provides data on soil C and N... -
Federal
Data from: Impact of larval food source on the stability of the <i>Bactrocera dorsalis </i>microbiome
Department of Agriculture —
We conducted a fly rearing experiment to characterize diet-induced changes in the microbiome of female Bactrocera dorsalis. In order to explicitly investigate the... -
Federal
Zip Search Version 0.9
Department of Agriculture —
Java Tool to extrapolate latitude and longitude from US Postal Service database The purpose of this tool is to estimate latitude and longitude from a user inputted... -
Federal
Data and code from: Stem borer herbivory dependent on interactions of sugarcane variety, associated traits, and presence of prior borer damage
Department of Agriculture —
This dataset contains all the data and code needed to reproduce the analyses in the manuscript: Penn, H. J., & Read, Q. D. (2023). Stem borer herbivory dependent... -
Federal
Global RainSIM - Version 1.0
Department of Agriculture —
The purpose of this tool is to estimate daily precipitation patterns for a yearly cycle at any location on the globe. The user input is simply the latitude and... -
Federal
Data and code from: A high throughput approach for measuring soil slaking index
Department of Agriculture —
This dataset includes soil wet aggregate stability measurements from the Upper Mississippi River Basin LTAR site in Ames, Iowa. Samples were collected in 2021 from... -
Federal
Data from: Efficient imaging and computer vision detection of two cell shapes in young cotton fibers
Department of Agriculture —
Methods Cotton plants were grown in a well-controlled greenhouse in the NC State Phytotron as described previously (Pierce et al, 2019). Flowers were tagged on the... -
Federal
Data and code from: Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, <i>Pseudocysta perseae</i> (Hemiptera: Tingidae)
Department of Agriculture —
Datasets and R script used for article accepted to Environmental Entomology (June 5, 2024):"Avocado cultivar and tree-to-tree leaf compositional differences affect...