Data and code from: Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, <i>Pseudocysta perseae</i> (Hemiptera: Tingidae)

Metadata Updated: June 5, 2025

Datasets and R script used for article accepted to Environmental Entomology (June 5, 2024):"Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, Pseudocysta perseae (Hemiptera: Tingidae)."
Authors: Bosch, Michael; Sun, Xiuxiu; Hall, Sierra; Love, Ken; Cox, David; Matsumoto, Tracie; Liang, Peishih; Follett, Peter; Stockton, Dara

Rep_GLMM_UHKCES.csv: Data used for repeated measures generalized linear mixed model for abundance surveys conducted at the University of Hawai'i Kona Cooperative Extension Service orchard.

Rep_GLMM_CC.csv: Data used for repeated measures generalized linear mixed model for abundance surveys conducted at the Captain Cook orchard.

ALB_Honaunau.csv: Data summarizing avocado lace bug abundance from leaves collected from the Honaunau orchard. Is to be used to perform generalized linear mixed models between lace bug abundance and sugars in corresponding avocado leaves.

LeafTraits_Honaunau.csv: Data for performing generalized linear mixed models between avocado lace bug abundance and several avocado leaf traits from leaves collected from the Honaunau orchard.

Sugars_Honaunau.csv: Data for performing generalized linear mixed models between avocado lace bug abundance and avocado leaf sugar content from leaves collected from the Honaunau orchard.

Fig1_Average.csv: Data averaging avocado lace bug abundance across trees surveyed at the University of Hawai'i Kona Cooperative Extension Service and Captain Cook orchards. To be used to generating figure 1 in manuscript.

Fig1_Sites.csv: Data on avocado lace bug abundance across trees surveyed at the University of Hawai'i Kona Cooperative Extension Service and Captain Cook orchards. To be used to generating figure 1 in manuscript.

LogOdds_USDAGermplasm.csv: Data used for performing a repeated measures proportional odds logistic regression on avocado lace bug infestation category surveys conducted at the USDA Germplasm Repository.

EE_Rscript.R: R script used to run analyses conducted and construct figures presented in the corresponding manuscript. Required R packages include:

tidyverse
reshape2
DHARMa
scales
glmmTMB
emmeans
cowplot
repolr

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons Attribution

Downloads & Resources

Datasets&Rscript.zipZIP

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Dates

Metadata Created Date	June 29, 2024
Metadata Updated Date	June 5, 2025

Metadata Source

Data.json Data.json Metadata
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Harvested from USDA JSON

Additional Metadata

Resource Type	Dataset
Metadata Created Date	June 29, 2024
Metadata Updated Date	June 5, 2025
Publisher	Agricultural Research Service
Maintainer	Bosch, Michael, J.
Identifier	10.15482/USDA.ADC/25988068.v1
Data Last Modified	2025-05-02
Public Access Level	public
Bureau Code	005:18
Metadata Context	https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version	https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby	https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id	8e4d40e0-3905-482f-b375-126d8fa3a037
Harvest Source Id	d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title	USDA JSON
License	https://creativecommons.org/licenses/by/4.0/
Program Code	005:040
Source Datajson Identifier	True
Source Hash	8018b467a45e680af0df3ad03087aa9b5ffafa0b580169db172b69843306b1fb
Source Schema Version	1.1
Temporal	2021-06-01/2023-05-01

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