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    • Transcriptomic Responses to Hexabromocyclododecane in Japanese Quail

    Metadata Updated: September 6, 2024

    This study examined effects of the brominated flame retardant hexabromocyclododecane (HBCD) on the avian endocrine system. Japanese quail (Coturnix japonica) were exposed to multiple doses of HBCD over multiple generations through feed and by maternal deposition into the egg. Liver transcriptomes were examined to identify genes and pathways directly affected by HBCD to better understand the mechanisms of action in birds. RNA was extracted from liver of adults and embryos and analyzed (1x50 bp) on an Illumina HiSeq 2000. NCBI Biosample accessions and the raw counts that were input into the differential expression analysis are provided in this dataset. The raw sequence data are available at the NCBI Sequence Read Archive under Bioproject number PRJNA313931.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

    Downloads & Resources

    Dates

    Metadata Created Date August 25, 2024
    Metadata Updated Date September 6, 2024

    Metadata Source

    Harvested from DOI EDI

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date August 25, 2024
    Metadata Updated Date September 6, 2024
    Publisher U.S. Geological Survey
    Maintainer
    @Id http://datainventory.doi.gov/id/dataset/f79d2614dee1c6a7dc1ad53768a4f43b
    Identifier USGS:6658c353d34ef3137d35fa86
    Data Last Modified 20240409
    Category geospatial
    Public Access Level public
    Bureau Code 010:12
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Metadata Catalog ID https://datainventory.doi.gov/data.json
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 6b4f8077-f01f-430e-9fbf-d26b6aaef153
    Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
    Harvest Source Title DOI EDI
    Metadata Type geospatial
    Old Spatial -76.822929,39.049052,-76.81263,39.056917
    Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
    Source Datajson Identifier True
    Source Hash cd551b041ed25091fd4f18a7e1049b3892550f68492bfa8a22d6d03e28724982
    Source Schema Version 1.1
    Spatial {"type": "Polygon", "coordinates": -76.822929, 39.049052, -76.822929, 39.056917, -76.81263, 39.056917, -76.81263, 39.049052, -76.822929, 39.049052}

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