The Network Data Exchange (NDEx)
NDEx is an online commons where scientists can upload, share, and publicly distribute biological networks and pathway models. The NDEx Project maintains a web-accessible public server, a documentation website, provides seamless connectivity to Cytoscape as well as programmatic access using a variety of languages including Python and Java. NDEx users can easily create accounts or sign in using their Google credentials thanks to the supported open authentication (OAUTH2) method and mint DOIs for their networks to use in publications or include in other resources for long term access.
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Complete Metadata
| @type | Dataset |
|---|---|
| accessRights | public |
| contactPoint |
[ { "fn": "Office of Data Science Strategy (ODSS)", "@type": "Kind", "hasEmail": "mailto:ODSSInfo@mail.nih.gov" } ] |
| description | NDEx is an online commons where scientists can upload, share, and publicly distribute biological networks and pathway models. The NDEx Project maintains a web-accessible public server, a documentation website, provides seamless connectivity to Cytoscape as well as programmatic access using a variety of languages including Python and Java. NDEx users can easily create accounts or sign in using their Google credentials thanks to the supported open authentication (OAUTH2) method and mint DOIs for their networks to use in publications or include in other resources for long term access. |
| distribution |
[ { "@type": "Distribution", "accessURL": "https://home.ndexbio.org/finding-and-querying-networks/" } ] |
| identifier | https://www.ndexbio.org |
| inventoried | 2026-09-27 |
| keyword |
[ "Computational biology", "Other", "Sequence biology" ] |
| publisher |
{ "name": "National Cancer Institute (NCI)", "@type": "Organization", "subOrganizationOf": [ { "name": "National Institutes of Health (NIH)", "@type": "Organization", "subOrganizationOf": [ { "name": "U.S. Department of Health and Human Services", "@type": "Organization" } ] } ] } |
| theme |
[ { "@type": "Concept", "prefLabel": "human" }, { "@type": "Concept", "prefLabel": "non-human" } ] |
| title | The Network Data Exchange (NDEx) |
