Structure - Molecular Modeling Database (MMDB)
Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine sequence-structure-function relationships, interactions, active sites, and more.
Resources
2 resources available
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Molecular Modeling Database (MMDB) query interface
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Download Molecular Modeling Database (MMDB) Data
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"009:25"
]
|
| contactPoint |
{
"fn": "National Library of Medicine",
"@type": "vcard:Contact",
"hasEmail": "mailto:custserv@nlm.nih.gov"
}
|
| description | Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine sequence-structure-function relationships, interactions, active sites, and more. |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Molecular Modeling Database (MMDB) query interface",
"mediaType": "text/html",
"description": "Experimentally resolved structures of proteins, RNA, and DNA, derived from the Protein Data Bank (PDB), with value-added features such as explicit chemical graphs, computationally identified 3D domains (compact substructures) that are used to identify similar 3D structures, as well as links to literature, similar sequences, information about chemicals bound to the structures, and more. These connections make it possible, for example, to find 3D structures for homologs of a protein sequence of interest, then interactively view the sequence-structure relationships, active sites, bound chemicals, journal articles, and more.",
"downloadURL": "https://www.ncbi.nlm.nih.gov/structure/"
},
{
"@type": "dcat:Distribution",
"title": "Download Molecular Modeling Database (MMDB) Data",
"mediaType": "text/html",
"downloadURL": "https://ftp.ncbi.nih.gov/mmdb"
}
]
|
| identifier | https://datadiscovery.nlm.nih.gov/api/views/b58i-eyqq |
| issued | 2022-02-08 |
| keyword |
[
"computational biology",
"dataset",
"macromolecules",
"protein",
"tools & utilities"
]
|
| landingPage | https://www.ncbi.nlm.nih.gov/structure/ |
| license | http://opendefinition.org/licenses/odc-odbl/ |
| modified | 2025-06-18 |
| programCode |
[
"009:041"
]
|
| publisher |
{
"name": "National Library of Medicine",
"@type": "org:Organization"
}
|
| theme |
[
"Diagnostic Imaging"
]
|
| title | Structure - Molecular Modeling Database (MMDB) |
