Software and Data associated with "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA"
The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with the following reference
DeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, https://doi.org/10.1016/j.bpj.2023.03.002.
The software and data can also be found at https://github.com/usnistgov/dye_dna_plates.
Resources
5 resources available
-
File describing reproduction procedure
BIN -
Documentation in HTML format
ZIP -
Version 0.7 of the software
ZIP -
Version 1.0.1
GZIP -
Version 1.0.1
ZIP
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "006:55" ] |
| contactPoint |
{ "fn": "Robert De Jaco", "hasEmail": "mailto:robert.dejaco@nist.gov" } |
| description | The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with the following reference DeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, https://doi.org/10.1016/j.bpj.2023.03.002. The software and data can also be found at https://github.com/usnistgov/dye_dna_plates. |
| distribution |
[ { "title": "File describing reproduction procedure", "mediaType": "application/octet-stream", "description": "Step-by-step instructions enabling reproduction of paper", "downloadURL": "https://data.nist.gov/od/ds/mds2-2762/REPRODUCEME.md" }, { "title": "Documentation in HTML format", "mediaType": "application/x-zip-compressed", "description": "This compressed file contains documentation of this software and dataset in the HTML format. It can be viewed by downloading, extracting, and opening the index.html file with a browser.", "downloadURL": "https://data.nist.gov/od/ds/mds2-2762/singlehtml.zip" }, { "title": "Version 0.7 of the software", "mediaType": "application/x-zip-compressed", "description": "This compressed folder contains all software and data required to reproduce the manuscript. The version is 0.7.", "downloadURL": "https://data.nist.gov/od/ds/mds2-2762/DyeDNAPlates_v0.7.zip" }, { "title": "Version 1.0.1", "mediaType": "application/gzip", "description": "Version 1.0.1 of code/software.", "downloadURL": "https://data.nist.gov/od/ds/mds2-2762/dye_dna_plates-1.0.1.tar.gz" }, { "title": "Version 1.0.1", "mediaType": "application/x-zip-compressed", "downloadURL": "https://data.nist.gov/od/ds/mds2-2762/dye_dna_plates-1.0.1.zip" } ] |
| identifier | ark:/88434/mds2-2762 |
| issued | 2022-09-02 |
| keyword |
[ "fluorescence", "fluorescence-data", "intercalating dyes", "mathematical-modeling", "noise-removal", "numerical-optimization", "python", "total-least-squares" ] |
| landingPage | https://data.nist.gov/od/id/mds2-2762 |
| language |
[ "en" ] |
| license | https://www.nist.gov/open/license |
| modified | 2023-03-15 00:00:00 |
| programCode |
[ "006:045" ] |
| publisher |
{ "name": "National Institute of Standards and Technology", "@type": "org:Organization" } |
| references |
[ "https://doi.org/10.1016/j.bpj.2023.03.002" ] |
| theme |
[ "Bioscience", "Chemistry", "Health", "Mathematics and Statistics", "Metrology" ] |
| title | Software and Data associated with "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA" |
