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    • Sequencing Data for Hospital Metagenomes

    Metadata Updated: November 12, 2020

    FASTA files containing the sequence data and for Assembled contigs (FastA), Predicted genes (FastA), Predicted proteins (FastA), Gene prediction (GFF v2). This dataset is not publicly accessible because: These are sequences that have already been deposited in publicly available databases and therefore we can avoid replication. Also the data is quite large and there are numerous files associated with these entries, which are included in the links below. It can be accessed through the following means: Using the following web links

    https://www.ncbi.nlm.nih.gov/bioproject/PRJNA299404 https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP065069 http://enve-omics.ce.gatech.edu/data/showerheads. Format: The data represent genome sequencing and assembly of 180 different contigs.

    This dataset is associated with the following publication: Soto-Giron, M.J., L. Rodriguez, C. Luo , M. Elk, H. Ryu, J. Santodomingo , and K. Konstantinidis. Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, USA, 82(9): 2872-2883, (2016).

    Access & Use Information

    Public: This dataset is intended for public access and use. License: See this page for license information.

    Downloads & Resources

    No file downloads have been provided. The publisher may provide downloads in the future or they may be available from their other links.

    References

    https://doi.org/10.1128/aem.03529-15

    Dates

    Metadata Created Date November 12, 2020
    Metadata Updated Date November 12, 2020

    Metadata Source

    Harvested from EPA ScienceHub

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date November 12, 2020
    Metadata Updated Date November 12, 2020
    Publisher U.S. EPA Office of Research and Development (ORD)
    Maintainer
    Identifier https://doi.org/10.23719/1503087
    Data Last Modified 2016-12-05
    Public Access Level public
    Bureau Code 020:00
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Harvest Object Id 3ce87d86-64f7-4672-82a5-330be0c873ca
    Harvest Source Id 04b59eaf-ae53-4066-93db-80f2ed0df446
    Harvest Source Title EPA ScienceHub
    License https://pasteur.epa.gov/license/sciencehub-license.html
    Program Code 020:096
    Publisher Hierarchy U.S. Government > U.S. Environmental Protection Agency > U.S. EPA Office of Research and Development (ORD)
    Related Documents https://doi.org/10.1128/aem.03529-15
    Source Datajson Identifier True
    Source Hash 2e348bb6bbc5c69e464371b9f55994a7f54ce48f
    Source Schema Version 1.1

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