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RNA-seq analysis of mycobacteria stress response to microgravity

Metadata Updated: August 30, 2025

The aim of this work is to determine whether mycobacteria have enhanced virulence during space travel and what mechanisms they use to adapt to microgravity. M. marinum and LHM4 were grown in high aspect ratio vessels (HARV) in a rotary cell culture system (RCCS) under normal gravity (NG) or low shear simulated microgravity (MG). To determine the effect of MG on the stress responses activated by the growth conditions, we used RNAseq to examine what genes were expressed. For RNAseq, the bacteria are harvested, RNA isolated and converted DNA (cDNA), and the cDNA sequenced. Using bioinformatics, the amount of expression of the different M. marinum genes were compared between the NG and MG samples. To make sure that we were examining only gene expression changes due to MG, only bacteria in early exponential growth were used in the RNAseq studies. Triplicate NG and MG cultures were used to generate samples of bacteria grown for ~40 hrs. We also grew triplicate cultures for 4 days and then diluted them again and grew them for another ~40 hrs so we could examine gene expression from bacteria exposed for a longer time. In summary, this study determined that waterborne mycobacteria alter their growth, expression of stress responses, and their sensitivity to oxidizing conditions when subjected to growth under MG.

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

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Dates

Metadata Created Date April 11, 2025
Metadata Updated Date August 30, 2025

Metadata Source

Harvested from NASA Data.json

Additional Metadata

Resource Type Dataset
Metadata Created Date April 11, 2025
Metadata Updated Date August 30, 2025
Publisher Open Science Data Repository
Maintainer
Identifier 10.26030/3wcg-5t20
Data Last Modified 2025-08-21
Category Biological and Physical Sciences
Public Access Level public
Bureau Code 026:00
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 9cc2277a-4842-49e3-bbaa-294b3b0a73dd
Harvest Source Id 58f92550-7a01-4f00-b1b2-8dc953bd598f
Harvest Source Title NASA Data.json
Program Code 026:000
Source Datajson Identifier True
Source Hash e28fa7ce80a44f130ecc7be63c866c8d50a429a332e7d44909e3ea55d65ba4e9
Source Schema Version 1.1

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