RGTM 10169
Resources
83 resources available
-
Research Grade Test Material (RGTM) 10169
FILE -
ont_pycoqc.html
ZIP -
multiqc.html
ZIP -
Resource 4
TXT -
Resource 5
TXT -
Resource 6
TXT -
Resource 7
TXT -
Resource 8
TXT -
Resource 9
TXT -
Resource 10
TXT -
Resource 11
TXT -
Resource 12
ZIP -
Resource 13
TXT -
Resource 14
ZIP -
Resource 15
TXT -
Resource 16
ZIP -
Resource 17
TXT -
Resource 18
ZIP -
Resource 19
TXT -
Resource 20
TXT -
Resource 21
TXT -
Resource 22
TXT -
Resource 23
TXT -
Resource 24
JSON -
Resource 25
TXT -
Resource 26
TXT -
Resource 27
TXT -
Resource 28
TXT -
Resource 29
TXT -
Resource 30
TXT -
Resource 31
TXT -
Resource 32
TXT -
Resource 33
TXT -
Resource 34
GZIP -
Resource 35
TXT -
Resource 36
GZIP -
Resource 37
TXT -
Resource 38
GZIP -
Resource 39
TXT -
Resource 40
GZIP -
Resource 41
TXT -
Resource 42
BIN -
Resource 43
BIN -
Resource 44
TXT -
Resource 45
TXT -
Resource 46
GZIP -
Resource 47
TXT -
Resource 48
BIN -
Resource 49
TXT -
Resource 50
GZIP -
Resource 51
TXT -
Resource 52
BIN -
Resource 53
TXT -
Resource 54
TXT -
Resource 55
TXT -
Resource 56
BIN -
Resource 57
TXT -
Resource 58
TXT -
Resource 59
TXT -
Resource 60
GZIP -
Resource 61
TXT -
Resource 62
BIN -
Resource 63
BIN -
Resource 64
TXT -
Resource 65
TXT -
Resource 66
GZIP -
Resource 67
TXT -
Resource 68
TXT -
Resource 69
TXT -
Resource 70
TXT -
Resource 71
TXT -
Resource 72
BIN -
Resource 73
TXT -
Resource 74
BIN -
Resource 75
TXT -
Resource 76
BIN -
Resource 77
TXT -
Resource 78
BIN -
Resource 79
TXT -
Resource 80
BIN -
Resource 81
TXT -
Resource 82
BIN -
Resource 83
TXT
Find Related Datasets
Search by Tags
Click any tag below to search for similar datasets
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| accrualPeriodicity | irregular |
| bureauCode |
[ "006:55" ] |
| contactPoint |
{ "fn": "Megan Cleveland", "hasEmail": "mailto:megan.cleveland@nist.gov" } |
| description | NIST developed a reference material consisting of synthetic fragments of the SARS-CoV-2 virus RNA, which is the target of molecular diagnostic tests. These RNA fragments can assist in the development and validation of RT-qPCR assays for the detection SARS-CoV-2. The RNA fragments are characterized for concentration using digital PCR methods, may be used to assess limits of detection for SARS-CoV-2 assays, and may calibrate other in-house or commercial SARS-CoV-2 controls. This dataset includes data used for RTGM 10169 SARs-Cov-2 Research Grade Test Material validation. The Illumina and ONT sequence data were used to verify the construct sequence. |
| distribution |
[ { "title": "Research Grade Test Material (RGTM) 10169", "accessURL": "https://github.com/usnistgov/RGTM10169", "description": "information related to Research Grade Test Material (RGTM) 10169" }, { "title": "ont_pycoqc.html", "mediaType": "application/x-zip-compressed", "description": "This file contains the ont_pycoqc.html file", "downloadURL": "https://data.nist.gov/od/ds/mds2-2714/ont%20pycoqc%20html.zip" }, { "title": "multiqc.html", "mediaType": "application/x-zip-compressed", "description": "This zip file contains multiqc.html", "downloadURL": "https://data.nist.gov/od/ds/mds2-2714/multiqc%20html.zip" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/README.md" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/README.md.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c1.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c1.txt.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c2.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c2.txt.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ont.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ont.txt.sha256" }, { "mediaType": "application/zip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R1_fastqc.zip" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R1_fastqc.zip.sha256" }, { "mediaType": "application/zip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R2_fastqc.zip" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R2_fastqc.zip.sha256" }, { "mediaType": "application/zip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R1_fastqc.zip" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R1_fastqc.zip.sha256" }, { "mediaType": "application/zip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R2_fastqc.zip" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R2_fastqc.zip.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc.log" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc.log.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_citations.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_citations.txt.sha256" }, { "mediaType": "application/json", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_data.json" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_data.json.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_fastqc.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_fastqc.txt.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_general_stats.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_general_stats.txt.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_samtools_stats.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_samtools_stats.txt.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_sources.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_sources.txt.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R1_001.fastq.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R1_001.fastq.gz.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R2_001.fastq.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R2_001.fastq.gz.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R1_001.fastq.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R1_001.fastq.gz.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R2_001.fastq.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R2_001.fastq.gz.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam.bai" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam.bai.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz.tbi" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz.tbi.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz.tbi" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz.tbi.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_depth.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_depth.txt.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5.chk" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5.chk.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5sum_list.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5sum_list.txt.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/fast5s.tar.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/fast5s.tar.gz.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam.bai" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam.bai.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.fastq.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.fastq.gz.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_depth.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_depth.txt.sha256" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_guppy_sequencing_summary.txt" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_guppy_sequencing_summary.txt.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/annotations.bed" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/annotations.bed.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct1_w_flankings.fa" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct1_w_flankings.fa.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct2_w_flankings.fa" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct2_w_flankings.fa.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/constructs_w_flankings.fa" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/constructs_w_flankings.fa.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/primers.bed" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/primers.bed.sha256" }, { "mediaType": "application/octet-stream", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/sars-cov-2-RGTM.genome" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/sars-cov-2-RGTM.genome.sha256" } ] |
| identifier | ark:/88434/mds2-2714 |
| issued | 2023-02-09 |
| keyword |
[ "Biosciences and Health", "DNA", "PCR", "SRM", "digital PCR", "reference material", "sequencing", "virus" ] |
| landingPage | https://data.nist.gov/od/id/mds2-2714 |
| language |
[ "en" ] |
| license | https://www.nist.gov/open/license |
| modified | 2022-07-15 00:00:00 |
| programCode |
[ "006:045" ] |
| publisher |
{ "name": "National Institute of Standards and Technology", "@type": "org:Organization" } |
| theme |
[ "Bioscience:Genomic measurements" ] |
| title | RGTM 10169 |