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R code to fit Gaussian process models to white-nose syndrome/Pseudogymnoascus destructans monitoring data across North America from 2006-2022

Metadata Updated: July 6, 2024

This code supports the manuscript "Gaussian process forecasts Pseudogymnoascus destructans will cover coterminous United States by 2030." The code is used to fit Gaussian process models to publicly accessible monitoring data on the spread of white-nose syndrome in North America. These models are used to make predictions on a fine spatial grid, giving a forecast (and hindcast) of the spread of white-nose syndrome at any location. Also contained in the code is a retrospective cross validation experiment, producing parameter estimates and model scoring over time. The code also relies on the GRTS grid for model prediction, which is publicly accessible at https://doi.org/10.5066/p9o75ydv. Shapefiles such as administrative boundaries can be used to add to plots are not required for the analysis.

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

Downloads & Resources

Dates

Metadata Created Date June 1, 2023
Metadata Updated Date July 6, 2024

Metadata Source

Harvested from DOI EDI

Additional Metadata

Resource Type Dataset
Metadata Created Date June 1, 2023
Metadata Updated Date July 6, 2024
Publisher U.S. Geological Survey
Maintainer
@Id http://datainventory.doi.gov/id/dataset/3adc3ec3a24d8880a5057a338c204980
Identifier USGS:634e9f6cd34e47431c154384
Data Last Modified 20221110
Category geospatial
Public Access Level public
Bureau Code 010:12
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Metadata Catalog ID https://datainventory.doi.gov/data.json
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id e44388c8-7a18-4ca5-9c9b-93775d52d7f1
Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
Harvest Source Title DOI EDI
Metadata Type geospatial
Old Spatial -168.75,23.564,-49.9219,71.35
Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
Source Datajson Identifier True
Source Hash 57ea2a5fe271fbe129f340ff55a648c3ce9401932e3d583129aa1bcff5ceac94
Source Schema Version 1.1
Spatial {"type": "Polygon", "coordinates": -168.75, 23.564, -168.75, 71.35, -49.9219, 71.35, -49.9219, 23.564, -168.75, 23.564}

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