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    • PPdiffuse: Web-based (html and javascript) calculator for voltage-driven transport of polypeptides in nanopores

    Metadata Updated: July 29, 2022

    Web calculator for polypeptide motion through nanopores. The calculation is done in the framework of conditional first passage times based on the Smoluchowski transport equation. These calculations are quite complex in general, but this calculator allows the piecewise construction of an energy landscape that reflects the average forces on a polymer confined in a nanopore based on its primary sequence. The calculator is written in HTML and javascript.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: See this page for license information.

    Downloads & Resources

    References

    https://doi.org/10.1016/j.bpj.2017.12.019
    https://doi.org/10.1074/jbc.RA117.001569
    https://doi.org/10.1039/C6NR08145B
    https://doi.org/10.1103/PhysRevLett.111.248301
    https://doi.org/10.1103/PhysRevE.86.011921
    https://doi.org/10.1038/nphys1230

    Dates

    Metadata Created Date March 11, 2021
    Metadata Updated Date July 29, 2022
    Data Update Frequency irregular

    Metadata Source

    Harvested from NIST

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 11, 2021
    Metadata Updated Date July 29, 2022
    Publisher National Institute of Standards and Technology
    Maintainer
    Identifier ark:/88434/mds2-2176
    Data First Published 2020-04-01
    Language en
    Data Last Modified 2020-01-30 00:00:00
    Category Nanotechnology:Nanobiotechnology, Chemistry:Molecular characterization, Physics:Biological physics
    Public Access Level public
    Data Update Frequency irregular
    Bureau Code 006:55
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/data.json
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 247abb82-bd3a-416a-be91-d9ab8b5f761e
    Harvest Source Id 74e175d9-66b3-4323-ac98-e2a90eeb93c0
    Harvest Source Title NIST
    Homepage URL https://data.nist.gov/od/id/mds2-2176
    License https://www.nist.gov/open/license
    Program Code 006:045
    Related Documents https://doi.org/10.1016/j.bpj.2017.12.019, https://doi.org/10.1074/jbc.RA117.001569, https://doi.org/10.1039/C6NR08145B, https://doi.org/10.1103/PhysRevLett.111.248301, https://doi.org/10.1103/PhysRevE.86.011921, https://doi.org/10.1038/nphys1230
    Source Datajson Identifier True
    Source Hash 73d3a3b88dc6fcfb2d55a26eb22a0f29cdb46d33
    Source Schema Version 1.1

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