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    • Parasite sample voucher numbers and 28S rRNA alignment file for parasites collected from California Giant Salamander (Dicamptodon ensatus) from Webb Creek, in the Bear Creek Redwoods Preserve in Santa Clara County, California, USA

    Metadata Updated: July 20, 2024

    Multi sequence file (.msf) file used to construct a 28S rRNA phylogenetic tree of species of Euryhelmis and other heterophyid trematodes. Sequences were generated from metacercariae samples at U.S. Geological Survey National Wildlife Health Center (NWHC) and compared for base pair similarities with publicly available sequences from GenBank using BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi). Selection of GenBank sequences to include in the .msf file was based on the number of base pair similarities (94% or higher identity to this study’s sequences), 98–100% coverage AND stage of parasite from which the sequence was generated. An excel file listing all parasites and DNA from NWHC vouchered with the University of New Mexico, Museum of Southwestern Biology, Division of Parasitology along with GenBank Voucher numbers of deposited partial 28S rRNA, mitochondrial CO1 and 18S rRNA gene sequences.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

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    Dates

    Metadata Created Date July 20, 2024
    Metadata Updated Date July 20, 2024

    Metadata Source

    Harvested from DOI EDI

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date July 20, 2024
    Metadata Updated Date July 20, 2024
    Publisher U.S. Geological Survey
    Maintainer
    @Id http://datainventory.doi.gov/id/dataset/93b3ec0481b1ea7816165fd393280bdc
    Identifier USGS:659f2fffd34e5af967a350e0
    Data Last Modified 20240326
    Category geospatial
    Public Access Level public
    Bureau Code 010:12
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Metadata Catalog ID https://datainventory.doi.gov/data.json
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 2904c3a1-232f-4c29-8f02-05bcdc869cb8
    Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
    Harvest Source Title DOI EDI
    Metadata Type geospatial
    Old Spatial -122.0014,37.1757,-122.0011,37.1761
    Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
    Source Datajson Identifier True
    Source Hash 5248a22ddbf978b2d9bd3fd5cb6be9619ad2a9aea32ca580e9ab7dcbd85e110e
    Source Schema Version 1.1
    Spatial {"type": "Polygon", "coordinates": -122.0014, 37.1757, -122.0014, 37.1761, -122.0011, 37.1761, -122.0011, 37.1757, -122.0014, 37.1757}

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