Output of 18S metabarcoding analysis of grab samples collected from Lake Harsha in 2015 (OTU reads over time and space).
Data associated with the Hydrobiologia article titled "Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding." They include the number of reads and assigned taxonomies for each observational taxonomic unit (OTU) within each sampling date and location.
This dataset is associated with the following publication:
Banerji, A., M. Bagley, M. Elk, E. Pilgrim, J. Martinson, and J. Santodomingo. Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding. HYDROBIOLOGIA. Springer, New York, NY, USA, 818(1): 71-86, (2018).
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Aabir Banerji", "hasEmail": "mailto:banerji.aabir@epa.gov" } |
| describedBy | https://pasteur.epa.gov/uploads/10.23719/1425375/documents/Variable%20List%20for%20LH_2015_18S_t.series.L.csv.docx |
| describedByType | application/vnd.openxmlformats-officedocument.wordprocessingml.document |
| description | Data associated with the Hydrobiologia article titled "Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding." They include the number of reads and assigned taxonomies for each observational taxonomic unit (OTU) within each sampling date and location. This dataset is associated with the following publication: Banerji, A., M. Bagley, M. Elk, E. Pilgrim, J. Martinson, and J. Santodomingo. Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding. HYDROBIOLOGIA. Springer, New York, NY, USA, 818(1): 71-86, (2018). |
| distribution |
[ { "title": "LH_2015_18S_t.series.L.csv", "mediaType": "application/vnd.ms-excel", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1425375/LH_2015_18S_t.series.L.csv" } ] |
| identifier | https://doi.org/10.23719/1425375 |
| keyword |
[ "18S rRNA gene", "DNA metabarcoding", "cyanobacteria", "ecological community", "ecological indicator", "eukaryotes", "freshwater lake", "harmful algal bloom", "multipurpose reservoir", "phytoplankton", "plankton", "trophic interaction", "zooplankton" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2018-03-01 |
| programCode |
[ "020:096" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.1007/s10750-018-3593-0" ] |
| rights |
null
|
| title | Output of 18S metabarcoding analysis of grab samples collected from Lake Harsha in 2015 (OTU reads over time and space). |
