Skip to main content
U.S. flag

An official website of the United States government

NCCOS Assessment: Fertilization cross results examining genetic relatedness impact on successful reproduction in three species of reef building corals in the Florida Reef Tract in 2019 and 2022 (NCEI Accession 0289357)

Published by NOAA National Centers for Environmental Information | National Oceanic and Atmospheric Administration, Department of Commerce | Catalog Last Checked: August 03, 2026 at 04:39 AM | Dataset Last Updated: March 07, 2024 at 12:00 AM
Acropora cervicornis, A. palmata and Orbicella faveolata are important reef-building coral species in the Florida Reef Tract (FRT). These species have experienced alarming declines throughout the FRT, resulting in an increased risk of inbreeding depression and susceptibility to decreased fitness in surviving colonies. Acropora cervicornis, A. palmata and O. faveolata are broadcast spawners, introducing genetic diversity through sexual recombination of gametes during annual spawning events. Successful reproduction during this time is critical for curbing the deleterious effects of inbreeding depression, and in successfully restoring wild colonies to self-sustaining levels of genetic diversity. A critical step in the reproductive cycle of these species is the success of gamete fertilization following mass spawning events. Several abiotic causes of gametic incompatibilities have been reliably observed in these species, and incompatibility between certain genotypes has been shown to occur. This dataset represents the collection of gametes from three coral species following nine spawning events in the Florida Keys during two spawning years (2019 and 2022), reciprocal fertilization trials with gametes from each parent and determined fertilization success for each cross. Additionally, tissue fragments were collected from each A. cervicornis parent, DNA was isolated from the tissue and single nucleotide polymorphism analyses were performed using the Axiom Coral-Algae Genotyping array (Axiom AcropSNP, ThermoFisher Scientific). This data package contains images of coral eggs post fertilization trial and the results in spreadsheet format. The raw A. cervicornis single nucleotide polymorphism (SNP) data are also provided.

Resources

19 resources available

  • NCEI Dataset Landing Page

    TEXT/HTML
    Visit Page

  • Descriptive Information

    TEXT/HTML
    Visit Page

  • HTTPS

    TEXT/HTML
    Visit Page

  • FTP

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1007/s00338-017-1651-0

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1002/eap.1978

    PLACEHOLDER/VALUE
    Download

  • https://doi.org/10.1371/journal.pone.0030486

    PLACEHOLDER/VALUE
    Download

  • https://doi.org/10.2307/1542017

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1534/g3.119.400125

    PLACEHOLDER/VALUE
    Download

  • https://ggplot2.tidyverse.org

    TEXT/HTML
    Visit Page

  • https://github.com/tidyverse/dplyr

    TEXT/HTML
    Visit Page

  • https://CRAN.R-project.org/package=ggpubr

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1086/519795

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1186/s13742-015-0047-8

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1093/bioinformatics/btq559

    TEXT/HTML
    Visit Page

  • https://doi.org/10.1111/j.1755-0998.2010.02885.x

    PLACEHOLDER/VALUE
    Download

  • https://repository.library.cofc.edu/handle/123456789/5537

    TEXT/HTML
    Visit Page

  • GCMD Keyword Forum Page

    TEXT/HTML
    Visit Page

  • NCEI Contact Information

    TEXT/HTML
    Visit Page

Find Related Datasets

Search by Tags

Click any tag below to search for similar datasets

0289357 CORAL camera biological laboratory analyses NOAA National Centers for Coastal Ocean Science NOAA Southeast Fisheries Science Center NOAA National Centers for Coastal Ocean Science

Complete Metadata
@type dcat:Dataset
accessLevel non-public
contactPoint 
{
  "fn": "NOAA National Centers for Environmental Information",
  "@type": "vcard:Contact",
  "hasEmail": "mailto:ncei.info@noaa.gov"
}
describedByType application/octet-steam
description Acropora cervicornis, A. palmata and Orbicella faveolata are important reef-building coral species in the Florida Reef Tract (FRT). These species have experienced alarming declines throughout the FRT, resulting in an increased risk of inbreeding depression and susceptibility to decreased fitness in surviving colonies. Acropora cervicornis, A. palmata and O. faveolata are broadcast spawners, introducing genetic diversity through sexual recombination of gametes during annual spawning events. Successful reproduction during this time is critical for curbing the deleterious effects of inbreeding depression, and in successfully restoring wild colonies to self-sustaining levels of genetic diversity. A critical step in the reproductive cycle of these species is the success of gamete fertilization following mass spawning events. Several abiotic causes of gametic incompatibilities have been reliably observed in these species, and incompatibility between certain genotypes has been shown to occur. This dataset represents the collection of gametes from three coral species following nine spawning events in the Florida Keys during two spawning years (2019 and 2022), reciprocal fertilization trials with gametes from each parent and determined fertilization success for each cross. Additionally, tissue fragments were collected from each A. cervicornis parent, DNA was isolated from the tissue and single nucleotide polymorphism analyses were performed using the Axiom Coral-Algae Genotyping array (Axiom AcropSNP, ThermoFisher Scientific). This data package contains images of coral eggs post fertilization trial and the results in spreadsheet format. The raw A. cervicornis single nucleotide polymorphism (SNP) data are also provided.
distribution 
[
  {
    "@type": "dcat:Distribution",
    "title": "NCEI Dataset Landing Page",
    "accessURL": "https://doi.org/10.25921/snwd-4v72",
    "mediaType": "text/html",
    "description": "Navigate directly to the URL for a descriptive web page with download links.",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "Descriptive Information",
    "accessURL": "https://www.ncei.noaa.gov/archive/accession/oas/289357",
    "mediaType": "text/html",
    "description": "Navigate directly to the URL for a descriptive web page with download links.",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "HTTPS",
    "accessURL": "https://www.ncei.noaa.gov/archive/accession/download/289357",
    "mediaType": "text/html",
    "description": "Navigate directly to the URL for data access and direct download.",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "FTP",
    "accessURL": "ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0223/0289357/",
    "mediaType": "text/html",
    "description": "These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1007/s00338-017-1651-0",
    "accessURL": "https://doi.org/10.1007/s00338-017-1651-0",
    "mediaType": "text/html",
    "description": "journal article",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1002/eap.1978",
    "mediaType": "placeholder/value",
    "description": "journal article",
    "downloadURL": "https://doi.org/10.1002/eap.1978",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1371/journal.pone.0030486",
    "mediaType": "placeholder/value",
    "description": "journal article",
    "downloadURL": "https://doi.org/10.1371/journal.pone.0030486",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.2307/1542017",
    "accessURL": "https://doi.org/10.2307/1542017",
    "mediaType": "text/html",
    "description": "journal article",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1534/g3.119.400125",
    "mediaType": "placeholder/value",
    "description": "journal article",
    "downloadURL": "https://doi.org/10.1534/g3.119.400125",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://ggplot2.tidyverse.org",
    "accessURL": "https://ggplot2.tidyverse.org",
    "mediaType": "text/html",
    "description": "Navigate directly to the URL for data access and direct download.",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://github.com/tidyverse/dplyr",
    "accessURL": "https://github.com/tidyverse/dplyr",
    "mediaType": "text/html",
    "description": "Data processing software",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://CRAN.R-project.org/package=ggpubr",
    "accessURL": "https://CRAN.R-project.org/package=ggpubr",
    "mediaType": "text/html",
    "description": "Data processing software",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1086/519795",
    "accessURL": "https://doi.org/10.1086/519795",
    "mediaType": "text/html",
    "description": "journal article",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1186/s13742-015-0047-8",
    "accessURL": "https://doi.org/10.1186/s13742-015-0047-8",
    "mediaType": "text/html",
    "description": "journal article",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1093/bioinformatics/btq559",
    "accessURL": "https://doi.org/10.1093/bioinformatics/btq559",
    "mediaType": "text/html",
    "description": "journal article",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://doi.org/10.1111/j.1755-0998.2010.02885.x",
    "mediaType": "placeholder/value",
    "description": "journal article",
    "downloadURL": "https://doi.org/10.1111/j.1755-0998.2010.02885.x",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "https://repository.library.cofc.edu/handle/123456789/5537",
    "accessURL": "https://repository.library.cofc.edu/handle/123456789/5537",
    "mediaType": "text/html",
    "description": "Research Thesis",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "GCMD Keyword Forum Page",
    "accessURL": "https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords",
    "mediaType": "text/html",
    "description": "Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords",
    "describedByType": "application/octet-stream"
  },
  {
    "@type": "dcat:Distribution",
    "title": "NCEI Contact Information",
    "accessURL": "https://www.ncei.noaa.gov/contact",
    "mediaType": "text/html",
    "description": "Information for contacts at NCEI.",
    "describedByType": "application/octet-stream"
  }
]
identifier https://data.noaa.gov/waf/NOAA/NESDIS/ncei/accessions/iso/xml/0289357.xml
issued 2024-02-16T00:00:00.000+00:00
keyword 
[
  "0289357",
  "CORAL",
  "camera",
  "biological",
  "laboratory analyses",
  "NOAA National Centers for Coastal Ocean Science",
  "NOAA Southeast Fisheries Science Center",
  "NOAA National Centers for Coastal Ocean Science",
  "Coral Reef Conservation Program (CRCP)",
  "CORAL REEF STUDIES",
  "North Atlantic Ocean",
  "oceanography",
  "DOC/NOAA/NMFS/SEFSC > Southeast Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
  "DOC/NOAA/NOS/NCCOS > National Centers for Coastal Ocean Science, National Ocean Service, NOAA, U.S. Department of Commerce",
  "31230",
  "Genetic relatedness: Does it matter for successful coral sexual reproduction?",
  "Genetic Data Sets > Genotyping",
  "Visual Images > Corals",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > ESA Listed Species",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Reproduction > Sexual Reproduction > Larvae",
  "EARTH SCIENCE > SOLID EARTH > GEOMORPHIC LANDFORMS/PROCESSES > COASTAL LANDFORMS > CORAL REEFS",
  "Coastal Change > Restoration",
  "Laboratory Experiment",
  "Acropora cervicornis",
  "Acropora palmata",
  "Orbicella faveolata",
  "Percent coral fertilization",
  "Single nucleotide polymorphism (SNP) data of Acropora cervicornis",
  "CAMERA > CAMERA",
  "Axiom Coral-Algae Genotyping array",
  "Microscope images",
  "COUNTRY/TERRITORY > United States of America > Florida > Monroe County > Key Largo (25N080W0010)",
  "COUNTRY/TERRITORY > United States of America > Florida > Monroe County > Tavernier (24N080W0006)",
  "OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Upper Florida Keys > Key Largo (25N080W0010)",
  "OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Upper Florida Keys > Tavernier (24N080W0006)",
  "OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN",
  "U.S. States and Territories > Florida",
  "Waterbodies > Atlantic Ocean",
  "Florida Reef Tract",
  "W29GP1"
]
landingPage https://www.ncei.noaa.gov/contact
language 
[]
license https://creativecommons.org/publicdomain/zero/1.0/
modified 2024-03-07T00:00:00.000+00:00
publisher 
{
  "name": "NOAA National Centers for Environmental Information",
  "@type": "org:Organization"
}
references 
[
  "https://doi.org/10.1007/s00338-017-1651-0",
  "https://doi.org/10.1002/eap.1978",
  "https://doi.org/10.1371/journal.pone.0030486",
  "https://doi.org/10.2307/1542017",
  "https://doi.org/10.1534/g3.119.400125",
  "https://ggplot2.tidyverse.org",
  "https://github.com/tidyverse/dplyr",
  "https://CRAN.R-project.org/package=ggpubr",
  "https://doi.org/10.1086/519795",
  "https://doi.org/10.1186/s13742-015-0047-8",
  "https://doi.org/10.1093/bioinformatics/btq559",
  "https://doi.org/10.1111/j.1755-0998.2010.02885.x",
  "https://repository.library.cofc.edu/handle/123456789/5537"
]
rights otherRestrictions
spatial -80.106,24.52328,-81.407,26.057167
temporal 2019-08-22T00:00:00+00:00/2022-08-17T00:00:00+00:00
theme 
[
  "geospatial"
]
title NCCOS Assessment: Fertilization cross results examining genetic relatedness impact on successful reproduction in three species of reef building corals in the Florida Reef Tract in 2019 and 2022 (NCEI Accession 0289357)

data.gov

An official website of the GSA's Technology Transformation Services

Looking for U.S. government information and services?
Visit USA.gov