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National Coral Reef Monitoring Program: Coral demographic data (adult and juvenile corals, species, colony length, condition, etc.) collected during Stratified Random Surveys (StRS) across the US Pacific since 2013 derived from in-situ diver surveys and structure-from-motion imagery

Published by Pacific Islands Fisheries Science Center | National Oceanic and Atmospheric Administration, Department of Commerce | Catalog Last Checked: August 02, 2026 at 11:25 PM | Dataset Last Updated: January 01, 2024 at 12:00 AM
The data described here result from benthic coral demographic surveys within belt transects of specified length and width for two life stages (juveniles and adults) across the US Pacific since 2013. This data is collected as part of the NOAA Pacific Islands Fisheries Science Center (PIFSC) and Ecosystem Sciences Division (ESD; formerly the Coral Reef Ecosystem Division) led National Coral Reef Monitoring Program (NCRMP) missions around the Mariana Archipelago, American Samoa, Pacific Remote Island Areas, and the Hawaiian Archipelago since 2013. This metadata record replaces those previously separated by region (Catalog ID: 22790, 36164,36165,36166). The in-situ diver coral demographic surveys are part of the Rapid Ecological Assessment (REA) surveys for corals and fish conducted during ESD-led NCRMP missions. From 2013 to 2017, a two-stage stratified random sampling (StRS) design was used to survey the coral reef ecosystems across sub-island sectors and three depth strata (shallow: 0-6m, mid: 6-18m and deep: >18m). Starting in 2018 a one-stage StRS design was employed. These sites represent a broad range of depths (1-25 m), habitat types (aggregate reef, patch reef, pavement, rock and boulder and rubble), coral cover, and diving conditions. Allocation of sampling effort was proportional to strata area and variance in coral density. The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than sampling more transects at a site. Therefore, site-level estimates and site to site comparisons should be used with caution. Starting in 2023 coral demographic data was also derived by the GIS analysis of benthic Structure from Motion (SfM) imagery. The source imagery was collected during in-water surveys conducted by divers, and is documented separately here: https://www.fisheries.noaa.gov/inport/item/63095.During each SfM survey, an 18m transect line was deployed along the isobath and photographed using underwater cameras while swimming in a back and forth swim pattern for later processing. At depths of 0-18m, SfM surveys were conducted over a 3 x 20m area and at depths >18m, a 3 x 13m area was surveyed, both with the transect running down the middle of the survey area. The photographs were processed using Agisoft Metashape software to generate orthomosaic images that were analyzed in ArcGIS for juvenile and adult coral colony demographic metrics. The data provide information on adult coral colony counts, morphology, size, partial mortality (old and recent dead), presence and causation of disease and other compromised health conditions, including bleaching. Juvenile colony surveys include morphology and size. Taxonomic identification of adult colonies is to the lowest taxonomic level possible and genus level for juveniles. Some segment observations were repeated for internal quality control starting in 2019, and indicated with a repeat segment flag and transectnum = -999; use column OG_OR_RPT_SEG to filter for only original segments. Refer to data dictionaries for details on column conditions. The raw data also include individual observations of crustose coralline algae diseases and Alcyonarian disease type and lesion size as well as the presence of other Anthozoans, such as other cnidarians including Alcyonareans, Zoantharians, Corallimorpharians, and Antipatharians (does not apply to PMNM surveys conducted in 2014 and 2015 or surveys conducted after 2017).

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EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > BENTHIC EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > AMERICAN SAMOA OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > HAWAIIAN ISLANDS OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > UNITED STATES MINOR OUTLYING ISLANDS OCEAN > PACIFIC OCEAN > WESTERN PACIFIC OCEAN > MICRONESIA > GUAM OCEAN > PACIFIC OCEAN > WESTERN PACIFIC OCEAN > MICRONESIA > NORTHERN MARIANA ISLANDS 743

Complete Metadata
@type dcat:Dataset
accessLevel non-public
contactPoint 
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  "hasEmail": "mailto:datagovsupport@gsa.gov"
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describedByType application/octet-steam
description The data described here result from benthic coral demographic surveys within belt transects of specified length and width for two life stages (juveniles and adults) across the US Pacific since 2013. This data is collected as part of the NOAA Pacific Islands Fisheries Science Center (PIFSC) and Ecosystem Sciences Division (ESD; formerly the Coral Reef Ecosystem Division) led National Coral Reef Monitoring Program (NCRMP) missions around the Mariana Archipelago, American Samoa, Pacific Remote Island Areas, and the Hawaiian Archipelago since 2013. This metadata record replaces those previously separated by region (Catalog ID: 22790, 36164,36165,36166). The in-situ diver coral demographic surveys are part of the Rapid Ecological Assessment (REA) surveys for corals and fish conducted during ESD-led NCRMP missions. From 2013 to 2017, a two-stage stratified random sampling (StRS) design was used to survey the coral reef ecosystems across sub-island sectors and three depth strata (shallow: 0-6m, mid: 6-18m and deep: >18m). Starting in 2018 a one-stage StRS design was employed. These sites represent a broad range of depths (1-25 m), habitat types (aggregate reef, patch reef, pavement, rock and boulder and rubble), coral cover, and diving conditions. Allocation of sampling effort was proportional to strata area and variance in coral density. The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than sampling more transects at a site. Therefore, site-level estimates and site to site comparisons should be used with caution. Starting in 2023 coral demographic data was also derived by the GIS analysis of benthic Structure from Motion (SfM) imagery. The source imagery was collected during in-water surveys conducted by divers, and is documented separately here: https://www.fisheries.noaa.gov/inport/item/63095.During each SfM survey, an 18m transect line was deployed along the isobath and photographed using underwater cameras while swimming in a back and forth swim pattern for later processing. At depths of 0-18m, SfM surveys were conducted over a 3 x 20m area and at depths >18m, a 3 x 13m area was surveyed, both with the transect running down the middle of the survey area. The photographs were processed using Agisoft Metashape software to generate orthomosaic images that were analyzed in ArcGIS for juvenile and adult coral colony demographic metrics. The data provide information on adult coral colony counts, morphology, size, partial mortality (old and recent dead), presence and causation of disease and other compromised health conditions, including bleaching. Juvenile colony surveys include morphology and size. Taxonomic identification of adult colonies is to the lowest taxonomic level possible and genus level for juveniles. Some segment observations were repeated for internal quality control starting in 2019, and indicated with a repeat segment flag and transectnum = -999; use column OG_OR_RPT_SEG to filter for only original segments. Refer to data dictionaries for details on column conditions. The raw data also include individual observations of crustose coralline algae diseases and Alcyonarian disease type and lesion size as well as the presence of other Anthozoans, such as other cnidarians including Alcyonareans, Zoantharians, Corallimorpharians, and Antipatharians (does not apply to PMNM surveys conducted in 2014 and 2015 or surveys conducted after 2017).
distribution 
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  {
    "@type": "dcat:Distribution",
    "title": "REFERENCE_GENUS_SPCODE.csv",
    "accessURL": "https://accession.nodc.noaa.gov/0298217",
    "mediaType": "text/html",
    "description": "Lookup table for species and taxon codes used by the NOAA Fisheries Ecosystem Sciences Division across the US Pacific. Note: 'AAAA' is used to denote no colonies observed. Genus is provided as it is recommended that analysis is performed at that level. This table also indicates any changes to taxonomic codes that are present in the original data.",
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  },
  {
    "@type": "dcat:Distribution",
    "title": "GCMD Keyword Forum Page",
    "accessURL": "https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords",
    "mediaType": "text/html",
    "description": "Global Change Master Directory (GCMD). 2026. GCMD Keywords, Version 24. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords",
    "describedByType": "application/octet-stream"
  },
  {
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    "mediaType": "text/html",
    "description": "View the complete metadata record on InPort for more information about this dataset.",
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identifier https://data.noaa.gov/waf/NOAA/nmfs/pifsc/iso/xml/71550.xml
issued 2024-01-01T00:00:00.000+00:00
keyword 
[
  "EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > BENTHIC",
  "EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF",
  "OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > AMERICAN SAMOA",
  "OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > HAWAIIAN ISLANDS",
  "OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > UNITED STATES MINOR OUTLYING ISLANDS",
  "OCEAN > PACIFIC OCEAN > WESTERN PACIFIC OCEAN > MICRONESIA > GUAM",
  "OCEAN > PACIFIC OCEAN > WESTERN PACIFIC OCEAN > MICRONESIA > NORTHERN MARIANA ISLANDS",
  "743",
  "National Coral Reef Monitoring Program",
  "Numeric Data Sets > Benthic",
  "EARTH SCIENCE > Biosphere > Ecological Dynamics > Species Richness",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Coral Condition",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Coral Diseases > Bleaching",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Coral Colony Size and Condition",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Rapid assessment studies",
  "EARTH SCIENCE > Biosphere > Zoology > Corals > Scleractinia (stony corals)",
  "EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs",
  "EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology",
  "EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > BioDiversity",
  "EARTH SCIENCE > Oceans > Marine Biology > Coral",
  "EARTH SCIENCE > Oceans > Marine Biology > Coral Communities",
  "NEARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Photographic Analysis",
  "CORAL",
  "CORAL - CENSUS",
  "CORAL - COLONY SIZE",
  "CORAL - SPECIES IDENTIFICATION",
  "GIS product",
  "derived products",
  "in situ",
  "laboratory analysis",
  "survey",
  "survey - biological",
  "survey - coral reef",
  "survey - swimmer/diver",
  "visual observation",
  "CORAL REEF STUDIES",
  "Coral Reef Conservation Program",
  "National Coral Reef Monitoring Program",
  "US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Aguihan > Aguihan Island (Aguijan) (14N145E0006)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Asuncion Island > Asuncion Island (19N145E0001)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Maug > Maug Island (20N145E0001)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Northern Mariana Islands > Northern Mariana Islands ( CNMI ) (18N146E0000)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Pagan > Pagan Island (18N145E0001)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Rota > Rota Island ( Luta ) (14N145E0007)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Saipan > Saipan Island (15N145E0002)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Sarigan Island > Sarigan Island (16N145E0003)",
  "COUNTRY/TERRITORY > Northern Mariana Islands > Tinian > Tinian Island (14N145E0005)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > American Samoa (14S170W0000)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Ofu Island (14S169W0013)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Olosega Island (14S169W0014)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Rose Atoll (14S168W0001)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Swains Atoll (11S171W0001)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Ta'u Island (14S169W0012)",
  "COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Tutuila Island (14S170W0016)",
  "COUNTRY/TERRITORY > United States of America > Guam > Guam (13N144E0000)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Hawaii > Hawaii (21N160W0000)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Hawaii > Hawaii Island (19N155W0003)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Hawaii > Kauai Island (22N159W0001",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Hawaii > Molokai Island (21N157W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > French Frigate Shoals (24N166W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > Kure Atoll (28N178W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > Lisianski Island (25N173W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > Northwestern Hawaiian Islands (28N178W0000)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > Oahu (21N157W0003)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > Pearl and Hermes Reef (27N176W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Kalawao > Kahoolawe Island (20N156W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Kauai > Niihau Island (21N160W0001)",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Maui > Lanai Island (20N156W0002",
  "COUNTRY/TERRITORY > United States of America > Hawaii > Maui > Maui Island (20N156W0004",
  "COUNTRY/TERRITORY > United States of America > Hawaiian Islands (21N157W0027)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Baker Island (00N176W0001)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Howland Island (00S176W0001)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Jarvis Island (00S160W0001)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Johnston Atoll (16N169W0001)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Kingman Reef (06N162W0001)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Palmyra Atoll (05N162W0001)",
  "COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Wake Atoll (19N167E0001)",
  "OCEAN BASIN > Pacific Ocean > American Samoa > American Samoa (14S170W0000)",
  "OCEAN BASIN > Pacific Ocean > American Samoa > Rose Atoll (14S168W0001)",
  "OCEAN BASIN > Pacific Ocean > American Samoa > Swains Atoll (11S171W0001)",
  "OCEAN BASIN > Pacific Ocean > American Samoa > Tutuila Island (14S170W0016)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Baker Island > Baker Island (00N176W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands (21N157W0027)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Hawaii > Hawaii (21N160W0000",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Hawaii Island > Hawaii Island (19N155W0003",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Kahoolawe Island > Kahoolawe Island (20N156W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Kauai Island > Kauai Island (22N159W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Lanai Island > Lanai Island (20N156W0002)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Maui Island > Maui Island (20N156W0004)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Molokai Island > Molokai Island (21N157W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Niihau Island > Niihau Island (21N160W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Hawaiian Islands > Oahu Island > Oahu (21N157W0003)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Howland Island > Howland Island (00S176W0001",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Johnston Atoll > Johnston Atoll (16N169W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Jarvis Island (00S160W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Kingman Reef (06N162W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Palmyra Atoll (05N162W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Northwestern Hawaiian Islands (28N178W0000)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Northwestern Hawaiian Islands > French Frigate Shoals (24N166W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Northwestern Hawaiian Islands > Kure Atoll (28N178W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Northwestern Hawaiian Islands > Lisianski Island (25N173W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Northwestern Hawaiian Islands > Pearl and Hermes Reef (27N176W0001)",
  "OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Wake Atoll > Wake Atoll (19N167E0001)",
  "OCEAN BASIN > Pacific Ocean > Manu'a Group > Ofu Island (14S169W0013)",
  "OCEAN BASIN > Pacific Ocean > Manu'a Group > Olosega Island (14S169W0014)",
  "OCEAN BASIN > Pacific Ocean > Manu'a Group > Ta'u Island (14S169W0012)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Aguihan Island Reefs > Aguihan Island (Aguijan) (14N145E0006)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Asuncion Island > Asuncion Island (19N145E0001)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Mariana Archipelago > Northern Mariana Islands ( CNMI ) (18N146E0000)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Maug Island > Maug Island (20N145E0001)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Pagan Island > Pagan Island (18N145E0001)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Rota Island > Rota Island ( Luta ) (14N145E0007)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Saipan Island > Saipan Island (15N145E0002)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Sarigan Island > Sarigan Island (16N145E0003)",
  "OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Tinian Island Reefs > Tinian Island (14N145E0005)",
  "Coastal Waters of Hawaii",
  "Equatorial Pacific Ocean",
  "Marianas Trench Marine National Monument",
  "Northwest Pacific",
  "Pacific Remote Islands Marine National Monument",
  "Papahanaumokuakea Marine National Monument",
  "Rose Atoll Marine National Monument",
  "South Pacific Ocean",
  "Central Pacific Ocean",
  "North Pacific Ocean",
  "photograph",
  "scale",
  "HI'IALAKAI",
  "OSCAR ELTON SETTE",
  "RAINIER",
  "small boat",
  "CRED",
  "CREP",
  "Coral Belt Survey",
  "Coral Demography",
  "Coral Disease",
  "Coral Reef Ecosystem Division",
  "Coral Reef Ecosystem Program",
  "ESD",
  "Ecosystem Sciences Division",
  "PIFSC",
  "Pacific Islands Fisheries Science Center",
  "RAMP",
  "Reef Assessment and Monitoring Program",
  "SfM",
  "Structure from Motion",
  "belt transect",
  "Triennial",
  "American Samoa",
  "CNMI",
  "Commonwealth of the Northern Marianas Islands",
  "MHI",
  "Main Hawaiian Islands",
  "Marianas",
  "NWHI",
  "Northwestern Hawaiian Islands",
  "PMNM",
  "PRIA",
  "PRIMNM",
  "Pacific Remote Island Areas",
  "DOC/NOAA/NMFS/PIFSC > Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
  "Pacific-wide Benthic"
]
landingPage https://www.fisheries.noaa.gov/inport/item/71550
language 
[]
license https://creativecommons.org/publicdomain/zero/1.0/
modified 2024-01-01T00:00:00.000+00:00
publisher 
{
  "name": "Pacific Islands Fisheries Science Center",
  "@type": "org:Organization"
}
rights otherRestrictions, unclassified
spatial -154.804172,-14.559759,144.634585,28.457971
temporal 2023-03-15T00:00:00+00:00/2023-08-08T00:00:00+00:00
theme 
[
  "geospatial"
]
title National Coral Reef Monitoring Program: Coral demographic data (adult and juvenile corals, species, colony length, condition, etc.) collected during Stratified Random Surveys (StRS) across the US Pacific since 2013 derived from in-situ diver surveys and structure-from-motion imagery

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