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    • Metagenetic analysis of stream community composition based on environmental DNA

    Metadata Updated: July 6, 2024

    A survey of environmental DNA was performed in Tunison Creek downstream of the USGS Tunison Aquatic Laboratory. The goal of the survey was to characterize the source ecological community at multiple trophic or taxonomic levels by associating DNA fragments with reference databases. Three taxonomically informative genetic loci were used: the mitochondrial cytochrome oxidase 1 locus, the mitochondrial 12S ribosomal locus, and the bacterial/organellar 16S ribosomal locus. The data set includes a list of sample and sequence accessions residing in the National Center for Biotechnology Information databases, which provide the raw data for analysis or re-use. The data also includes the representative sequences of operational taxonomic units (OTUs) and their abundance and taxonomic assignment, which are the primary endpoints of the data collection.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

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    Dates

    Metadata Created Date June 1, 2023
    Metadata Updated Date July 6, 2024

    Metadata Source

    Harvested from DOI EDI

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date June 1, 2023
    Metadata Updated Date July 6, 2024
    Publisher U.S. Geological Survey
    Maintainer
    @Id http://datainventory.doi.gov/id/dataset/c7ed420f383090d30e8a848dc6cc909b
    Identifier USGS:5bdcb9ebe4b0b3fc5cf0eb03
    Data Last Modified 20200820
    Category geospatial
    Public Access Level public
    Bureau Code 010:12
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Metadata Catalog ID https://datainventory.doi.gov/data.json
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id d5f1014a-3497-46ec-85cb-3064c08bbabf
    Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
    Harvest Source Title DOI EDI
    Metadata Type geospatial
    Old Spatial -76.26915,42.54865,-76.23465,42.56926
    Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
    Source Datajson Identifier True
    Source Hash a2e65c8dea7b1a4686b46faa41fd68ba830f1725936f9e5bfa65cb2ef4eb82b2
    Source Schema Version 1.1
    Spatial {"type": "Polygon", "coordinates": -76.26915, 42.54865, -76.26915, 42.56926, -76.23465, 42.56926, -76.23465, 42.54865, -76.26915, 42.54865}

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