LAMP assay for detection of Asian fish tapeworm
Data are relative fluorescent units obtained from the FAM channel of a AmpliFire Isothermal Fluorometer (Agdia, Inc., Elkhart, USA) recorded every 10 sec during as isothermal (LAMP) amplification. The isothermal reaction is to detect the Asian fish tapeworm, Schyzocotyle acheilognathi [syn. Bothriocephalus]. Samples (column headers) are described in tabs and include 1) positive control dilution series, 2) DNA Extractions from AFT sensitivity samples, and 3) DNA Extracted from non-AFT specificity controls.
Find Related Datasets
Search by Tags
Click any tag below to search for similar datasets
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "010:12" ] |
| contactPoint |
{ "fn": "Erik K Hofmeister", "@type": "vcard:Contact", "hasEmail": "mailto:ehofmeister@usgs.gov" } |
| description | Data are relative fluorescent units obtained from the FAM channel of a AmpliFire Isothermal Fluorometer (Agdia, Inc., Elkhart, USA) recorded every 10 sec during as isothermal (LAMP) amplification. The isothermal reaction is to detect the Asian fish tapeworm, Schyzocotyle acheilognathi [syn. Bothriocephalus]. Samples (column headers) are described in tabs and include 1) positive control dilution series, 2) DNA Extractions from AFT sensitivity samples, and 3) DNA Extracted from non-AFT specificity controls. |
| distribution |
[ { "@type": "dcat:Distribution", "title": "Digital Data", "format": "XML", "accessURL": "https://doi.org/10.5066/P96BOEN3", "mediaType": "application/http", "description": "Landing page for access to the data" }, { "@type": "dcat:Distribution", "title": "Original Metadata", "format": "XML", "mediaType": "text/xml", "description": "The metadata original format", "downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.5f862b1882cebef40f14c7a0.xml" } ] |
| identifier | http://datainventory.doi.gov/id/dataset/USGS_5f862b1882cebef40f14c7a0 |
| keyword |
[ "Asian fish tapeworm", "LAMP assay", "USGS:5f862b1882cebef40f14c7a0", "eDNA", "environmental DNA", "invasive species", "isothermal amplification", "loop-mediated isothermal amplification", "molecular detection", "parasites", "rapid assay" ] |
| modified | 2021-10-12T00:00:00Z |
| publisher |
{ "name": "U.S. Geological Survey", "@type": "org:Organization" } |
| spatial | 0.0000, 0.0000, 0.0000, 0.0000 |
| theme |
[ "geospatial" ] |
| title | LAMP assay for detection of Asian fish tapeworm |
