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Identification of QTL controlling domestication-related traits in cowpea (Vigna unguiculata L. Walp): Dataset

Metadata Updated: June 8, 2024

Cowpea (Vigna unguiculata L. Walp) is a warm-season legume with a genetically diverse gene-pool composed of wild and cultivated forms. Cowpea domestication involved considerable phenotypic changes from the wild progenitor, including reduction of pod shattering, increased organ size, and changes in flowering time. Little is known about the genetic basis underlying these changes. In this study, 215 recombinant inbred lines derived from a cross between a cultivated and a wild cowpea accession were used to evaluate nine domestication-related traits (pod shattering, peduncle length, flower color, days to flowering, 100-seed weight, pod length, leaf length, leaf width and seed number per pod). A high-density genetic map containing 17,739 single nucleotide polymorphisms was constructed and used to identify 16 quantitative trait loci (QTL) for these nine traits. Based on annotations of the cowpea reference genome, genes within these regions are reported. Four regions with clusters of QTL were identified, including one on chromosome 8 related to increased organ size. This study provides new knowledge of the genomic regions controlling domestication-related traits in cowpea as well as candidate genes underlying those QTL. This information can help to exploit wild relatives in cowpea breeding programs.

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

Downloads & Resources

References

https://data.usaid.gov/api/views/mbzh-vcr3/files/b936f4a1-a169-4432-9221-ef1b3967a9ab
https://data.usaid.gov/api/views/mbzh-vcr3/files/bda3904b-ca2a-4460-9eef-50f8e4df73f0

Dates

Metadata Created Date January 28, 2023
Metadata Updated Date June 8, 2024

Metadata Source

Harvested from USAID JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date January 28, 2023
Metadata Updated Date June 8, 2024
Publisher data.usaid.gov
Maintainer
Identifier https://data.usaid.gov/api/views/mbzh-vcr3
Data First Published 2023-01-25
Data Last Modified 2024-06-07
Category Agriculture
Public Access Level public
Bureau Code 184:15
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Metadata Catalog ID https://data.usaid.gov/data.json
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id f90165ea-b8e8-4aae-b69a-bf786d4fb65d
Harvest Source Id 0aeddf52-9cb0-4ab6-bc1f-b53172fe5348
Harvest Source Title USAID JSON
Homepage URL https://data.usaid.gov/d/mbzh-vcr3
Program Code 184:029
Related Documents https://data.usaid.gov/api/views/mbzh-vcr3/files/b936f4a1-a169-4432-9221-ef1b3967a9ab, https://data.usaid.gov/api/views/mbzh-vcr3/files/bda3904b-ca2a-4460-9eef-50f8e4df73f0
Source Datajson Identifier True
Source Hash 5cbde03409fc755dfdfa802776be255370dbe6b6d67fcd6aea1e4b4992bd9644
Source Schema Version 1.1

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