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Hilaria jamesii data for the Colorado Plateau of the southwestern United States

Metadata Updated: November 12, 2025

These data were compiled to investigate the demographic, phylogeographic, and adaptation history of Hilaria jamesii. The data release consists of three tab delimited text files that may be used to infer population structure or putative adaptive loci (hija_adaptation_dataset.stru), relationships among sampling localities (hija_phylogeny_dataset.phylip), or genetic diversity statistics (hija_diversity_stats.vcf). All files record genetic variation on an individual (.stru and .vcf) or sampling locality (.phylip) level. The .vcf file contains all of the information contained in the other files, but the file structures vary based on the programs used for analysis. These files may be opened and edited in a text editor program, such as Notepad ++ (PC) or BBEdit (Mac). The .vcf file can be loaded into the Stacks population program (Catchen et al. 2013) to calculate genetic diversity statistics. The .phylip file can be uploaded to phyML to generate a tree-based visualization of relationships ( http://www.atgc-montpellier.fr/phyml/). The .stru file can be used in the STRUCTURE program (Falush et al. 2007) to estimate population structure.

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

Downloads & Resources

Dates

Metadata Created Date September 13, 2025
Metadata Updated Date November 12, 2025

Metadata Source

Harvested from DOI USGS DCAT-US

Additional Metadata

Resource Type Dataset
Metadata Created Date September 13, 2025
Metadata Updated Date November 12, 2025
Publisher U.S. Geological Survey
Maintainer
Identifier http://datainventory.doi.gov/id/dataset/usgs-5dbc9b08e4b06957974edf52
Data Last Modified 2020-08-27T00:00:00Z
Category geospatial
Public Access Level public
Bureau Code 010:12
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Metadata Catalog ID https://ddi.doi.gov/usgs-data.json
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id dec71aca-fde0-4084-b39b-3b3b828f91c7
Harvest Source Id 2b80d118-ab3a-48ba-bd93-996bbacefac2
Harvest Source Title DOI USGS DCAT-US
Metadata Type geospatial
Old Spatial -119.2500, 33.8000, -103.3000, 42.1500
Source Datajson Identifier True
Source Hash 9a9421284880d2620ffc8c532a9087f88c128f03f9e88df5ea04ccd342659ce1
Source Schema Version 1.1
Spatial {"type": "Polygon", "coordinates": -119.2500, 33.8000, -119.2500, 42.1500, -103.3000, 42.1500, -103.3000, 33.8000, -119.2500, 33.8000}

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