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High-Rate Volumetric Particle Tracking Microscopy (HR-VPTM) validation data

Published by National Institute of Standards and Technology | National Institute of Standards and Technology | Catalog Last Checked: September 02, 2026 at 07:18 PM | Dataset Last Updated: January 23, 2023
To verify and validate the HR-VPTM technique, both synthetic images and gels with embedded particles undergoing controlled deformations were used to compared known and reconstructed deformations at assorted strain-rates or frame-rates. We simulated the light-field representation of particles undergoing motion with ray tracing and investigated the sensitivity of the measurement technique to synthetic noise floor and various motion fields. In experiments, a custom-built device deformed a hydrogel specimen in nominally simple shear at applied strain rates approximately 2 1/s, while light-field images were collected at approximately 500 frames per second frames per second. Files and formats include .tif images (raw data, input), .mat (reconstructed images, tracking results), .txt, .csv, and .yaml (all metadata). See also the data on MINDS@UW (https://minds.wisconsin.edu/handle/1793/83031), the accompanying paper in Experimental Mechanics (https://doi.org/10.1007/s11340-022-00885-z), and the complete code package released by collaborators at UW-Madison (https://github.com/francklab/HR-VPTM).

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Complete Metadata
@type dcat:Dataset
accessLevel public
accrualPeriodicity irregular
bureauCode 
[
  "006:55"
]
contactPoint 
{
  "fn": "Alexander Landauer",
  "hasEmail": "mailto:alexander.landauer@nist.gov"
}
description To verify and validate the HR-VPTM technique, both synthetic images and gels with embedded particles undergoing controlled deformations were used to compared known and reconstructed deformations at assorted strain-rates or frame-rates. We simulated the light-field representation of particles undergoing motion with ray tracing and investigated the sensitivity of the measurement technique to synthetic noise floor and various motion fields. In experiments, a custom-built device deformed a hydrogel specimen in nominally simple shear at applied strain rates approximately 2 1/s, while light-field images were collected at approximately 500 frames per second frames per second. Files and formats include .tif images (raw data, input), .mat (reconstructed images, tracking results), .txt, .csv, and .yaml (all metadata). See also the data on MINDS@UW (https://minds.wisconsin.edu/handle/1793/83031), the accompanying paper in Experimental Mechanics (https://doi.org/10.1007/s11340-022-00885-z), and the complete code package released by collaborators at UW-Madison (https://github.com/francklab/HR-VPTM).
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identifier ark:/88434/mds2-2605
issued 2023-02-14
keyword 
[
  "3D imaging",
  "Light field microscopy",
  "high speed imaging",
  "motion tracking",
  "particle tracking",
  "soft material",
  "volumetric deformation"
]
landingPage https://data.nist.gov/od/id/mds2-2605
language 
[
  "en"
]
license https://www.nist.gov/open/license
modified 2023-01-23 00:00:00
programCode 
[
  "006:045"
]
publisher 
{
  "name": "National Institute of Standards and Technology",
  "@type": "org:Organization"
}
references 
[
  "https://doi.org/10.1007/s11340-022-00885-z"
]
theme 
[
  "Materials:Materials characterization",
  "Mathematics and Statistics:Image and signal processing",
  "Metrology:Flow metrology and rheology"
]
title High-Rate Volumetric Particle Tracking Microscopy (HR-VPTM) validation data

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