Genotypes for six rare plant species found in San Diego County in 2016-2017
To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis.
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "010:12" ] |
| contactPoint |
{ "fn": "U.S. Geological Survey, Western Ecological Research Center", "@type": "vcard:Contact", "hasEmail": "mailto:gs-b-werc_data_management@usgs.gov" } |
| description | To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis. |
| distribution |
[ { "@type": "dcat:Distribution", "title": "Digital Data", "format": "XML", "accessURL": "https://doi.org/10.5066/P9OWNCG8", "mediaType": "application/http", "description": "Landing page for access to the data" }, { "@type": "dcat:Distribution", "title": "Original Metadata", "format": "XML", "mediaType": "text/xml", "description": "The metadata original format", "downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.5bc7bf71e4b0fc368ebe2d96.xml" } ] |
| identifier | http://datainventory.doi.gov/id/dataset/USGS_5bc7bf71e4b0fc368ebe2d96 |
| keyword |
[ "USGS:5bc7bf71e4b0fc368ebe2d96", "biological population management", "ddRADseq", "endangered species", "genetic diversity", "plants (organisms)" ] |
| modified | 2021-11-15T00:00:00Z |
| publisher |
{ "name": "U.S. Geological Survey", "@type": "org:Organization" } |
| spatial | -117.59567, 32.5341550000001, -116.080940333, 33.5050250000001 |
| theme |
[ "geospatial" ] |
| title | Genotypes for six rare plant species found in San Diego County in 2016-2017 |
