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Genomic data (ddRADseq) for phylogenetic and population diversity study of the Narrow-headed gartersnake (Thamnophis rufipunctatus) species complex and Mexican gartersnake (Thamnophis eques) subspecies

Metadata Updated: October 26, 2023

​W​e ​collected ​ddRADseq data using the Peterson et al. 2012 (see Methodology for full citation) protocol to study the population structure and genetic diversity of two threatened species of gartersnakes inhabiting the lower Colorado River Basin in the United States: Mogollon Narrow-headed gartersnake (Thamnophis rufipunctatus) and Northern Mexican gartersnake (T. eques megalops). ​Data were sequenced on an Illumina HiSeq 2500 and 4000 to generate 50 base pair sequence reads and stored as fastq files. ​

Data were submitted to NCBI in an approved format for their database. Data are stored in the NCBI Sequence Read Archive in fastq file format and can be found at https://www.ncbi.nlm.nih.gov/sra/SRP144044

These data support the following publication: Wood, D.A., Emmons, I.D., Nowak, E.M., Christman, B.L., Holycross, A.T., Jennings, R.D., and Vandergast, A.G., 2018, Conservation genomics of the Mogollon Narrow-headed gartersnake (Thamnophis rufipunctatus) and Northern Mexican gartersnake (T. eques megalops): U.S. Geological Survey Open-File Report XXXXXXXXX

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

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Dates

Metadata Created Date May 31, 2023
Metadata Updated Date October 26, 2023

Metadata Source

Harvested from DOI EDI

Additional Metadata

Resource Type Dataset
Metadata Created Date May 31, 2023
Metadata Updated Date October 26, 2023
Publisher U.S. Geological Survey
Maintainer
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Identifier USGS:ad24a41a-b372-4d0d-abc9-665c4f682c02
Data Last Modified 20180508
Category geospatial
Public Access Level public
Bureau Code 010:12
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Metadata Catalog ID https://datainventory.doi.gov/data.json
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 615511c6-30bd-46ff-a8b3-4771275ac5a2
Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
Harvest Source Title DOI EDI
Metadata Type geospatial
Old Spatial -113.8688,19.321,-99.6321,34.8861
Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
Source Datajson Identifier True
Source Hash 44a284c4324905f5071d26dc240030bb8f2151975f9094cb3652dd1979a856f3
Source Schema Version 1.1
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