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    • Genomic data (ddRADseq) for phylogenetic and population diversity study of the Narrow-headed gartersnake (Thamnophis rufipunctatus) species complex and Mexican gartersnake (Thamnophis eques) subspecies

    Metadata Updated: July 6, 2024

    ​W​e ​collected ​ddRADseq data using the Peterson et al. 2012 (see Methodology for full citation) protocol to study the population structure and genetic diversity of two threatened species of gartersnakes inhabiting the lower Colorado River Basin in the United States: Mogollon Narrow-headed gartersnake (Thamnophis rufipunctatus) and Northern Mexican gartersnake (T. eques megalops). ​Data were sequenced on an Illumina HiSeq 2500 and 4000 to generate 50 base pair sequence reads and stored as fastq files. ​

    Data were submitted to NCBI in an approved format for their database. Data are stored in the NCBI Sequence Read Archive in fastq file format and can be found at https://www.ncbi.nlm.nih.gov/sra/SRP144044

    These data support the following publication: Wood, D.A., Emmons, I.D., Nowak, E.M., Christman, B.L., Holycross, A.T., Jennings, R.D., and Vandergast, A.G., 2018, Conservation genomics of the Mogollon Narrow-headed gartersnake (Thamnophis rufipunctatus) and Northern Mexican gartersnake (T. eques megalops): U.S. Geological Survey Open-File Report XXXXXXXXX

    Access & Use Information

    Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

    Downloads & Resources

    Dates

    Metadata Created Date May 31, 2023
    Metadata Updated Date July 6, 2024

    Metadata Source

    Harvested from DOI EDI

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date May 31, 2023
    Metadata Updated Date July 6, 2024
    Publisher U.S. Geological Survey
    Maintainer
    @Id http://datainventory.doi.gov/id/dataset/733868fd7da12f6cdf55e66236e57fa6
    Identifier USGS:ad24a41a-b372-4d0d-abc9-665c4f682c02
    Data Last Modified 20180508
    Category geospatial
    Public Access Level public
    Bureau Code 010:12
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Metadata Catalog ID https://datainventory.doi.gov/data.json
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id a22c0cd6-b5e3-4b65-8404-ea68185f3b36
    Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
    Harvest Source Title DOI EDI
    Metadata Type geospatial
    Old Spatial -113.8688,19.321,-99.6321,34.8861
    Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
    Source Datajson Identifier True
    Source Hash 44a284c4324905f5071d26dc240030bb8f2151975f9094cb3652dd1979a856f3
    Source Schema Version 1.1
    Spatial {"type": "Polygon", "coordinates": -113.8688, 19.321, -113.8688, 34.8861, -99.6321, 34.8861, -99.6321, 19.321, -113.8688, 19.321}

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