Genome In A Bottle - v3.0 Genome Stratifications
Resources
221 resources available
-
DOI Access for Genome In A Bottle - v3.0 Genome Stratifications
FILE -
Resource 2
APPLICATION/OCTET-STREAM -
Resource 3
TEXT/PLAIN -
Resource 4
TEXT/PLAIN -
Resource 5
TEXT/PLAIN -
Resource 6
TEXT/PLAIN -
Resource 7
TEXT/PLAIN -
Resource 8
TEXT/PLAIN -
Resource 9
TEXT/PLAIN -
Resource 10
TEXT/PLAIN -
Resource 11
TEXT/PLAIN -
Resource 12
APPLICATION/OCTET-STREAM -
Resource 13
TEXT/PLAIN -
Resource 14
APPLICATION/OCTET-STREAM -
Resource 15
TEXT/PLAIN -
Resource 16
APPLICATION/OCTET-STREAM -
Resource 17
TEXT/PLAIN -
Resource 18
TEXT/PLAIN -
Resource 19
TEXT/PLAIN -
Resource 20
TEXT/PLAIN -
Resource 21
TEXT/PLAIN -
Resource 22
TEXT/PLAIN -
Resource 23
TEXT/PLAIN -
Resource 24
TEXT/TAB-SEPARATED-VALUES -
Resource 25
TEXT/PLAIN -
Resource 26
TEXT/TAB-SEPARATED-VALUES -
Resource 27
TEXT/PLAIN -
Resource 28
APPLICATION/OCTET-STREAM -
Resource 29
TEXT/PLAIN -
Resource 30
TEXT/PLAIN -
Resource 31
TEXT/PLAIN -
Resource 32
APPLICATION/OCTET-STREAM -
Resource 33
TEXT/PLAIN -
Resource 34
APPLICATION/PDF -
Resource 35
TEXT/PLAIN -
Resource 36
TEXT/PLAIN -
Resource 37
TEXT/PLAIN -
Resource 38
TEXT/PLAIN -
Resource 39
TEXT/PLAIN -
Resource 40
TEXT/PLAIN -
Resource 41
TEXT/PLAIN -
Resource 42
TEXT/PLAIN -
Resource 43
TEXT/PLAIN -
Resource 44
TEXT/PLAIN -
Resource 45
TEXT/PLAIN -
Resource 46
APPLICATION/OCTET-STREAM -
Resource 47
TEXT/PLAIN -
Resource 48
TEXT/PLAIN -
Resource 49
TEXT/PLAIN -
Resource 50
APPLICATION/OCTET-STREAM -
Resource 51
TEXT/PLAIN -
Resource 52
TEXT/PLAIN -
Resource 53
TEXT/PLAIN -
Resource 54
TEXT/PLAIN -
Resource 55
TEXT/PLAIN -
Resource 56
TEXT/PLAIN -
Resource 57
TEXT/PLAIN -
Resource 58
TEXT/PLAIN -
Resource 59
TEXT/PLAIN -
Resource 60
TEXT/PLAIN -
Resource 61
TEXT/PLAIN -
Resource 62
TEXT/PLAIN -
Resource 63
TEXT/PLAIN -
Resource 64
TEXT/PLAIN -
Resource 65
TEXT/PLAIN -
Resource 66
APPLICATION/OCTET-STREAM -
Resource 67
TEXT/PLAIN -
Resource 68
TEXT/PLAIN -
Resource 69
TEXT/PLAIN -
Resource 70
TEXT/PLAIN -
Resource 71
TEXT/PLAIN -
Resource 72
APPLICATION/OCTET-STREAM -
Resource 73
TEXT/PLAIN -
Resource 74
APPLICATION/OCTET-STREAM -
Resource 75
TEXT/PLAIN -
Resource 76
APPLICATION/OCTET-STREAM -
Resource 77
TEXT/PLAIN -
Resource 78
APPLICATION/OCTET-STREAM -
Resource 79
TEXT/PLAIN -
Resource 80
APPLICATION/OCTET-STREAM -
Resource 81
TEXT/PLAIN -
Resource 82
APPLICATION/OCTET-STREAM -
Resource 83
TEXT/PLAIN -
Resource 84
TEXT/PLAIN -
Resource 85
TEXT/PLAIN -
Resource 86
TEXT/PLAIN -
Resource 87
TEXT/PLAIN -
Resource 88
TEXT/PLAIN -
Resource 89
TEXT/PLAIN -
Resource 90
TEXT/PLAIN -
Resource 91
TEXT/PLAIN -
Resource 92
TEXT/X-PYTHON -
Resource 93
TEXT/PLAIN -
Resource 94
TEXT/PLAIN -
Resource 95
TEXT/PLAIN -
Resource 96
APPLICATION/OCTET-STREAM -
Resource 97
TEXT/PLAIN -
Resource 98
TEXT/PLAIN -
Resource 99
TEXT/PLAIN -
Resource 100
TEXT/PLAIN -
Resource 101
TEXT/PLAIN -
Resource 102
APPLICATION/OCTET-STREAM -
Resource 103
TEXT/PLAIN -
Resource 104
APPLICATION/OCTET-STREAM -
Resource 105
TEXT/PLAIN -
Resource 106
TEXT/PLAIN -
Resource 107
TEXT/PLAIN -
Resource 108
TEXT/PLAIN -
Resource 109
TEXT/PLAIN -
Resource 110
TEXT/PLAIN -
Resource 111
TEXT/PLAIN -
Resource 112
TEXT/PLAIN -
Resource 113
TEXT/PLAIN -
Resource 114
TEXT/PLAIN -
Resource 115
TEXT/PLAIN -
Resource 116
TEXT/PLAIN -
Resource 117
TEXT/PLAIN -
Resource 118
APPLICATION/OCTET-STREAM -
Resource 119
TEXT/PLAIN -
Resource 120
APPLICATION/PDF -
Resource 121
TEXT/PLAIN -
Resource 122
TEXT/PLAIN -
Resource 123
TEXT/PLAIN -
Resource 124
TEXT/PLAIN -
Resource 125
TEXT/PLAIN -
Resource 126
TEXT/PLAIN -
Resource 127
TEXT/PLAIN -
Resource 128
TEXT/PLAIN -
Resource 129
TEXT/PLAIN -
Resource 130
TEXT/PLAIN -
Resource 131
TEXT/PLAIN -
Resource 132
APPLICATION/OCTET-STREAM -
Resource 133
TEXT/PLAIN -
Resource 134
TEXT/PLAIN -
Resource 135
TEXT/PLAIN -
Resource 136
APPLICATION/OCTET-STREAM -
Resource 137
TEXT/PLAIN -
Resource 138
TEXT/PLAIN -
Resource 139
TEXT/PLAIN -
Resource 140
TEXT/PLAIN -
Resource 141
TEXT/PLAIN -
Resource 142
TEXT/PLAIN -
Resource 143
TEXT/PLAIN -
Resource 144
TEXT/PLAIN -
Resource 145
TEXT/PLAIN -
Resource 146
TEXT/PLAIN -
Resource 147
TEXT/PLAIN -
Resource 148
TEXT/PLAIN -
Resource 149
TEXT/PLAIN -
Resource 150
TEXT/PLAIN -
Resource 151
TEXT/PLAIN -
Resource 152
APPLICATION/OCTET-STREAM -
Resource 153
TEXT/PLAIN -
Resource 154
TEXT/PLAIN -
Resource 155
TEXT/PLAIN -
Resource 156
TEXT/PLAIN -
Resource 157
TEXT/PLAIN -
Resource 158
APPLICATION/OCTET-STREAM -
Resource 159
TEXT/PLAIN -
Resource 160
APPLICATION/OCTET-STREAM -
Resource 161
TEXT/PLAIN -
Resource 162
APPLICATION/OCTET-STREAM -
Resource 163
TEXT/PLAIN -
Resource 164
APPLICATION/OCTET-STREAM -
Resource 165
TEXT/PLAIN -
Resource 166
APPLICATION/OCTET-STREAM -
Resource 167
TEXT/PLAIN -
Resource 168
APPLICATION/OCTET-STREAM -
Resource 169
TEXT/PLAIN -
Resource 170
TEXT/PLAIN -
Resource 171
TEXT/PLAIN -
Resource 172
TEXT/PLAIN -
Resource 173
TEXT/PLAIN -
Resource 174
TEXT/PLAIN -
Resource 175
TEXT/PLAIN -
Resource 176
TEXT/PLAIN -
Resource 177
TEXT/PLAIN -
Resource 178
TEXT/X-PYTHON -
Resource 179
TEXT/PLAIN -
Resource 180
TEXT/PLAIN -
Resource 181
TEXT/PLAIN -
Resource 182
APPLICATION/OCTET-STREAM -
Resource 183
TEXT/PLAIN -
Resource 184
TEXT/PLAIN -
Resource 185
TEXT/PLAIN -
Resource 186
TEXT/PLAIN -
Resource 187
TEXT/PLAIN -
Resource 188
APPLICATION/OCTET-STREAM -
Resource 189
TEXT/PLAIN -
Resource 190
APPLICATION/OCTET-STREAM -
Resource 191
TEXT/PLAIN -
Resource 192
TEXT/PLAIN -
Resource 193
TEXT/PLAIN -
Resource 194
TEXT/PLAIN -
Resource 195
TEXT/PLAIN -
Resource 196
TEXT/PLAIN -
Resource 197
TEXT/PLAIN -
Resource 198
TEXT/PLAIN -
Resource 199
TEXT/PLAIN -
Resource 200
TEXT/PLAIN -
Resource 201
TEXT/PLAIN -
Resource 202
TEXT/PLAIN -
Resource 203
TEXT/PLAIN -
Resource 204
APPLICATION/GZIP -
Resource 205
TEXT/PLAIN -
Resource 206
APPLICATION/GZIP -
Resource 207
TEXT/PLAIN -
Resource 208
TEXT/PLAIN -
Resource 209
TEXT/PLAIN -
Resource 210
APPLICATION/OCTET-STREAM -
Resource 211
TEXT/PLAIN -
Resource 212
APPLICATION/OCTET-STREAM -
Resource 213
TEXT/PLAIN -
Resource 214
APPLICATION/OCTET-STREAM -
Resource 215
TEXT/PLAIN -
Resource 216
TEXT/CSV -
Resource 217
TEXT/PLAIN -
Resource 218
APPLICATION/OCTET-STREAM -
Resource 219
TEXT/PLAIN -
Resource 220
APPLICATION/PDF -
Resource 221
TEXT/PLAIN
Find Related Datasets
Search by Tags
Click any tag below to search for similar datasets
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"006:55"
]
|
| contactPoint |
{
"fn": "Justin Zook",
"hasEmail": "mailto:justin.zook@nist.gov"
}
|
| description | These v3.0 stratification BED files from the Global Alliance for Genomic Health (GA4GH) Benchmarking Team, the Genome in a Bottle Consortium and the Telomere-to-Telomere Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls in challenging and targeted regions of the the genome. v3.0 stratifications contain new and revised stratification files and replace v2.0 stratifications. |
| distribution |
[
{
"title": "DOI Access for Genome In A Bottle - v3.0 Genome Stratifications",
"accessURL": "https://doi.org/10.18434/mds2-2499"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/CHANGELOG"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/CHANGELOG.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/GIAB-v3.0-stratifications-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/GIAB-v3.0-stratifications-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/GIAB-stratifications-post-processing-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/GIAB-stratifications-post-processing-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/GRCh37_stratification_post-processing.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/GRCh37_stratification_post-processing.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/GRCh38_stratification_post-processing.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/GRCh38_stratification_post-processing.sh.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/PSA_Y_GRCh38.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/PSA_Y_GRCh38.bed.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/PSA_Y_hg19.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/PSA_Y_hg19.bed.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/gap_38_1thruY_sorted_merged.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/gap_38_1thruY_sorted_merged.bed.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/gaps-PSAY-README_37.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/gaps-PSAY-README_37.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/gaps-PSAY-README_38.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/gaps-PSAY-README_38.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/hg38.README_annotation.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/dependency-files/hg38.README_annotation.md.sha256"
},
{
"mediaType": "text/tab-separated-values",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/stratification-file-crosswalk-GRCh37.tsv"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/stratification-file-crosswalk-GRCh37.tsv.sha256"
},
{
"mediaType": "text/tab-separated-values",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/stratification-file-crosswalk-GRCh38.tsv"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/stratification-file-crosswalk-GRCh38.tsv.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/v2.01.00_stratification_post-processing.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/post-processing/v2.01.00_stratification_post-processing.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalRegions/GRCh37-FunctionalRegions-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalRegions/GRCh37-FunctionalRegions-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.Rmd"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.Rmd.sha256"
},
{
"mediaType": "application/pdf",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.pdf"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.pdf.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalTechnicallyDifficult/GRCh37-FunctionalTechnicallyDifficult-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalTechnicallyDifficult/GRCh37-FunctionalTechnicallyDifficult-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalTechnicallyDifficult/MRG_falsely_duplicated.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/FunctionalTechnicallyDifficult/MRG_falsely_duplicated.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GCcontent/GRCh37-GCcontent-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GCcontent/GRCh37-GCcontent-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GCcontent/seqtk_gc.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GCcontent/seqtk_gc.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37-GenomeSpecific-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37-GenomeSpecific-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37_Generating_v4.1_excluded_beds.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37_HG002_medical_genes_benchmark_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GRCh37_HG002_medical_genes_benchmark_generation.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG001_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG001_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG002_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG002_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG003_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG003_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG004_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG004_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG005_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG005_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG006_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG006_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG007_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/config/GRCh37_HG007_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/workflow/Snakefile"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/workflow/Snakefile.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/bedtools.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/bedtools.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/vcflib.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/vcflib.yaml.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG001_GRCh37_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG001_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG003_GRCh37_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG003_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG004_GRCh37_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG004_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG005_GRCh37_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG005_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG006_GRCh37_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG006_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG007_GRCh37_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/GenomeSpecific/HG007_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/FindSimpleRepeats_v2.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/FindSimpleRepeats_v2.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/GRCh37-LowComplexity-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/GRCh37-LowComplexity-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_gt20.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_gt20.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/GRCh37_SimpleRepeat_imperfecthomoplgt20_slop5.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/GRCh37_SimpleRepeat_imperfecthomoplgt20_slop5.sh.sha256"
},
{
"mediaType": "text/x-python",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/findSimpleRegions_quad.py"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/LowComplexity/findSimpleRegions_quad.py.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/OtherDifficult/GRCh37-OtherDifficult-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/OtherDifficult/GRCh37-OtherDifficult-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/OtherDifficult/GRCh37_Generating_v4.1_excluded_beds.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/OtherDifficult/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/OtherDifficult/merge_difficult_regions_GRCh37_2.01.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/OtherDifficult/merge_difficult_regions_GRCh37_2.01.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/SegmentalDuplications/GRCh37-SegDups-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/SegmentalDuplications/GRCh37-SegDups-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/SegmentalDuplications/GRCh37_Generating_v4.1_excluded_beds.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/SegmentalDuplications/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/SegmentalDuplications/GRCh37_new_chainSelf_and_Segdups.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/SegmentalDuplications/GRCh37_new_chainSelf_and_Segdups.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/mappability/GRCh37-mappability-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/mappability/GRCh37-mappability-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/mappability/make_all_and_notin_beds.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/mappability/make_all_and_notin_beds.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/mappability/run_GEM_mappability.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/mappability/run_GEM_mappability.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/union/GRCh37-union-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/union/GRCh37-union-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/union/merge_difficult_regions_GRCh37_2.01.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh37/union/merge_difficult_regions_GRCh37_2.01.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalRegions/GRCh38-FunctionalRegions-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalRegions/GRCh38-FunctionalRegions-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.Rmd"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.Rmd.sha256"
},
{
"mediaType": "application/pdf",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.pdf"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.pdf.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalTechnicallyDifficult/GRCh38-FunctionalTechnicallyDifficult-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalTechnicallyDifficult/GRCh38-FunctionalTechnicallyDifficult-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalTechnicallyDifficult/MRG_falsely_duplicated.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/FunctionalTechnicallyDifficult/MRG_falsely_duplicated.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GCcontent/GRCh38-GCcontent-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GCcontent/GRCh38-GCcontent-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GCcontent/grch38_seqtk_gc.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GCcontent/grch38_seqtk_gc.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38-GenomeSpecific-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38-GenomeSpecific-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38_Generating_v4.1_excluded_beds.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38_HG002_medical_genes_benchmark_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GRCh38_HG002_medical_genes_benchmark_generation.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG001_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG001_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG002_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG002_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG003_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG003_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG004_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG004_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG005_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG005_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG006_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG006_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG007_v4.2.1_GenomeSpecific_config.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/config/GRCh38_HG007_v4.2.1_GenomeSpecific_config.yaml.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/workflow/Snakefile"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/workflow/Snakefile.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/bedtools.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/bedtools.yaml.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/vcflib.yaml"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/GS-snakemake-pipeline/workflow/envs/vcflib.yaml.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG001_GRCh38_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG001_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG003_GRCh38_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG003_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG004_GRCh38_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG004_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG005_GRCh38_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG005_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG006_GRCh38_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG006_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG007_GRCh38_CNV_exclusion_bed_generation.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/GenomeSpecific/HG007_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/FindSimpleRepeats_GRCh38_v2.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/FindSimpleRepeats_GRCh38_v2.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/GRCh38-LowComplexity-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/GRCh38-LowComplexity-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_gt20.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_gt20.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/GRCh38_SimpleRepeat_imperfecthomoplgt20_slop5.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/GRCh38_SimpleRepeat_imperfecthomoplgt20_slop5.sh.sha256"
},
{
"mediaType": "text/x-python",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/findSimpleRegions_quad.py"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/LowComplexity/findSimpleRegions_quad.py.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/OtherDifficult/GRCh38-OtherDifficult-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/OtherDifficult/GRCh38-OtherDifficult-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/OtherDifficult/GRCh38_Generating_v4.1_excluded_beds.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/OtherDifficult/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/OtherDifficult/merge_difficult_regions_GRCh38_2.01.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/OtherDifficult/merge_difficult_regions_GRCh38_2.01.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/SegmentalDuplications/GRCh38-SegDups-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/SegmentalDuplications/GRCh38-SegDups-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/SegmentalDuplications/GRCh38_Generating_v4.1_excluded_beds.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/SegmentalDuplications/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/SegmentalDuplications/GRCh38_new_chainSelf_and_Segdups.ipynb"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/SegmentalDuplications/GRCh38_new_chainSelf_and_Segdups.ipynb.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/ancestry/GRCh38-ancestry-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/ancestry/GRCh38-ancestry-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/mappability/GRCh38-mappability-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/mappability/GRCh38-mappability-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/mappability/run_GEM_mappability_GRCh38.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/mappability/run_GEM_mappability_GRCh38.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/mappability/run_GEM_mappability_sort_GRCh38.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/mappability/run_GEM_mappability_sort_GRCh38.sh.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/union/GRCh38-union-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/union/GRCh38-union-README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/union/merge_difficult_regions_GRCh38_2.01.sh"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/stratification-generation/GRCh38/union/merge_difficult_regions_GRCh38_2.01.sh.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/v3.0-stratifications-GRCh37.tar.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/v3.0-stratifications-GRCh37.tar.gz.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/v3.0-stratifications-GRCh38.tar.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/v3.0-stratifications-GRCh38.tar.gz.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/GIAB-stratifications-validation-README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/GIAB-stratifications-validation-README.md.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/README_for_genome_bed_files"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/README_for_genome_bed_files.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/human.b37.1_22XY.genome.sorted_noNs_noPSAY_merged.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/human.b37.1_22XY.genome.sorted_noNs_noPSAY_merged.bed.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/human.hg38.1_22XY.genome.sorted_noNs_noPSAY_merged.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/human.hg38.1_22XY.genome.sorted_noNs_noPSAY_merged.bed.sha256"
},
{
"mediaType": "text/csv",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/v3.0-stratfications-info.csv"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/dependency-files/v3.0-stratfications-info.csv.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/v3.0-stratification_validation.Rmd"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/v3.0-stratification_validation.Rmd.sha256"
},
{
"mediaType": "application/pdf",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/v3.0-stratification_validation.pdf"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2499/validation/v3.0-stratification_validation.pdf.sha256"
}
]
|
| identifier | ark:/88434/mds2-2499 |
| issued | 2021-12-02 |
| keyword |
[
"Human genomics; DNA sequencing; Reference materials"
]
|
| landingPage | https://data.nist.gov/od/id/mds2-2499 |
| language |
[
"en"
]
|
| license | https://www.nist.gov/open/license |
| modified | 2021-11-08 00:00:00 |
| programCode |
[
"006:045"
]
|
| publisher |
{
"name": "National Institute of Standards and Technology",
"@type": "org:Organization"
}
|
| theme |
[
"Health:Precision medicine"
]
|
| title | Genome In A Bottle - v3.0 Genome Stratifications |
