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Genes Controlling Black Seed Coat and Pod Tip Color in Cowpea: Phenotype data for the MAGIC population

Metadata Updated: June 25, 2024

Seed coat color is an important part of consumer preferences for cowpea (Vigna unguiculata [L.] Walp). Color has been studied in numerous crop species and has often been linked to loci controlling the anthocyanin biosynthesis pathway. This study makes use of available resources, including mapping populations, a reference genome, and a high-density single nucleotide polymorphism genotyping platform, to map the black seed coat and purple pod tip color traits, with the gene symbol Bl, in cowpea. Several gene models encoding MYB domain protein 113 were identified as candidate genes. MYB domain proteins have been shown in other species to control expression of genes encoding enzymes for the final steps in the anthocyanin biosynthesis pathway. PCR analysis indicated that a presence/absence variation of one or more MYB113 genes may control the presence or absence of black pigment. A PCR marker has been developed for the MYB113 gene Vigun05g039500, a candidate gene for black seed coat color in cowpea.

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

Downloads & Resources

References

https://data.usaid.gov/api/views/fqg3-ddvy/files/0b764eb6-e11e-406b-9967-a370a85fab52

Dates

Metadata Created Date March 22, 2023
Metadata Updated Date June 25, 2024

Metadata Source

Harvested from USAID JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 22, 2023
Metadata Updated Date June 25, 2024
Publisher data.usaid.gov
Maintainer
Identifier https://data.usaid.gov/api/views/fqg3-ddvy
Data First Published 2020-09-08
Data Last Modified 2024-06-25
Category Agriculture
Public Access Level public
Bureau Code 184:15
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Metadata Catalog ID https://data.usaid.gov/data.json
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id aea140b5-2d7b-42da-9358-1669bcd57fec
Harvest Source Id 0aeddf52-9cb0-4ab6-bc1f-b53172fe5348
Harvest Source Title USAID JSON
Homepage URL https://data.usaid.gov/d/fqg3-ddvy
Program Code 184:029
Related Documents https://data.usaid.gov/api/views/fqg3-ddvy/files/0b764eb6-e11e-406b-9967-a370a85fab52
Source Datajson Identifier True
Source Hash 97e4abc18d35e4335ae5e6c5f449c2b8434d7772a50ef56614123c7d68d6113a
Source Schema Version 1.1

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