Gavia Species Identification and Diet Composition from Feces, Central North Slope, Alaska, 2012-2014
This data set is comprised of one table with sampling information and NCBI BioProject accession numbers for sequence information of this amplicon-based study targeting Loon (Gavia sp.) and fish species expected in lake systems of the North Slope of Alaska from fecal samples. Highly conserved primers which could differentiate species of interest were developed for five portions of gavia mtDNA genes (COXI, CytB, ND1, ND2, and ND5) and two portions of fish mtDNA genes (12S, and CytB). The reference sequences and conserved primer sets to identify species present were developed using publicly available data from NCBI GenBank.
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"010:12"
]
|
| contactPoint |
{
"fn": "U.S. Geological Survey, Alaska Science Center",
"@type": "vcard:Contact",
"hasEmail": "mailto:gs-ak_asc_datamanagers@usgs.gov"
}
|
| description | This data set is comprised of one table with sampling information and NCBI BioProject accession numbers for sequence information of this amplicon-based study targeting Loon (Gavia sp.) and fish species expected in lake systems of the North Slope of Alaska from fecal samples. Highly conserved primers which could differentiate species of interest were developed for five portions of gavia mtDNA genes (COXI, CytB, ND1, ND2, and ND5) and two portions of fish mtDNA genes (12S, and CytB). The reference sequences and conserved primer sets to identify species present were developed using publicly available data from NCBI GenBank. |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Digital Data",
"format": "XML",
"accessURL": "https://doi.org/10.5066/P9VMYY4J",
"mediaType": "application/http",
"description": "Landing page for access to the data"
},
{
"@type": "dcat:Distribution",
"title": "Original Metadata",
"format": "XML",
"mediaType": "text/xml",
"description": "The metadata original format",
"downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.ASC516.xml"
}
]
|
| identifier | http://datainventory.doi.gov/id/dataset/USGS_ASC516 |
| keyword |
[
"Alaska",
"Animals/Vertebrates",
"Aquatic ecosystems",
"Biota",
"Birds",
"Coastal ecosystems",
"Cytochrome b",
"Cytochrome oxidase I",
"DNA Primers",
"DNA sequencing",
"DNA, Mitochondrial",
"Diets",
"Environment",
"Environmental DNA",
"Food fishes",
"Genetic markers",
"Genetics",
"Loons",
"Migratory birds",
"NADH 1",
"NADH 2",
"NADH 5",
"North Slope",
"Polymerase chain reaction",
"Species/Population Interactions",
"Tundra ecosystems",
"USGS:ASC516",
"Wetland ecosystems",
"Wildlife",
"Wildlife food habits",
"eDNA"
]
|
| modified | 2024-07-31T00:00:00Z |
| publisher |
{
"name": "U.S. Geological Survey",
"@type": "org:Organization"
}
|
| spatial | -155.501, 70.704, -155.179, 70.376 |
| theme |
[
"geospatial"
]
|
| title | Gavia Species Identification and Diet Composition from Feces, Central North Slope, Alaska, 2012-2014 |
