FINDHAP

Metadata Updated: May 14, 2021

The findhap.f90 program finds haplotypes and imputes genotypes using multiple chip sets and sequence data. Program and download information can be found at the Animal Improvement Program (AIP) web site: http://aipl.arsusda.gov/software/findhap Downloads Version 4 program, example files, and executable (beta version — not quite ready for routine use on U.S. chip data, but performs better than version 3 for sequence data) Example data files for imputation study presented by VanRaden and Sun at the 2014 World Congress on Genetics Applied to Livestock Production

Files include actual pedigree, simulated true genotypes, simulated sequence reads, and imputed genotypes. This example used 500 reference bulls sequenced at 4× with 1% error and containing high-density SNPs; the 250 young bulls used to test imputation had only high-density SNPs. Other examples in the study can be generated by setting other options for programs findhap4, geno2seq, and genosim.

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons CCZero

Downloads & Resources

Dates

Metadata Created Date November 10, 2020
Metadata Updated Date May 14, 2021

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date November 10, 2020
Metadata Updated Date May 14, 2021
Publisher Agricultural Research Service
Unique Identifier Unknown
Maintainer
Identifier 32c52e5f-073f-4386-bb97-f9cca46a6fbf
Data Last Modified 2021-02-01
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 85758865-5b11-40c1-b0b3-bb719c6d5ebd
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://creativecommons.org/publicdomain/zero/1.0/
Program Code 005:040
Source Datajson Identifier True
Source Hash bd49481f5d193554c108c20049d1dcd44908bfc1
Source Schema Version 1.1

Didn't find what you're looking for? Suggest a dataset here.