FHM reference genome, annotation, and all associated DNA and RNA-sequencing data
The dataset contains the full fathead minnow (FHM) reference genome and annotation data as well all DNA sequencing data (PacBio long reads and Illumina paired-end reads) and RNA-seq data that were used to create the fathead minnow genome reference.
This dataset is associated with the following publication:
Martinson, J., D. Bencic, G. Toth, R. Flick, M. Kostich, M.J. See, D. Lattier, A. Biales, and W. Huang. De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 41(2): 448-461, (2022).
Resources
3 resources available
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https://www.ncbi.nlm.nih.gov/assembly/GCF_016745375.1/
FILE -
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA565199/
FILE -
https://www.ncbi.nlm.nih.gov/biosample/SAMN12875914/
FILE
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Weichun Huang", "hasEmail": "mailto:huang.weichun@epa.gov" } |
| description | The dataset contains the full fathead minnow (FHM) reference genome and annotation data as well all DNA sequencing data (PacBio long reads and Illumina paired-end reads) and RNA-seq data that were used to create the fathead minnow genome reference. This dataset is associated with the following publication: Martinson, J., D. Bencic, G. Toth, R. Flick, M. Kostich, M.J. See, D. Lattier, A. Biales, and W. Huang. De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 41(2): 448-461, (2022). |
| distribution |
[ { "title": "https://www.ncbi.nlm.nih.gov/assembly/GCF_016745375.1/", "accessURL": "https://www.ncbi.nlm.nih.gov/assembly/GCF_016745375.1/" }, { "title": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA565199/", "accessURL": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA565199/" }, { "title": "https://www.ncbi.nlm.nih.gov/biosample/SAMN12875914/", "accessURL": "https://www.ncbi.nlm.nih.gov/biosample/SAMN12875914/" } ] |
| identifier | https://doi.org/10.23719/1520933 |
| keyword |
[ "Clean Water Act", "Fathead minnows", "aquatic toxicity", "complete genome", "zebrafish" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2021-03-01 |
| programCode |
[ "020:096" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.1002/etc.5266", "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9560796" ] |
| rights |
null
|
| title | FHM reference genome, annotation, and all associated DNA and RNA-sequencing data |
