Early life coregonines collected from Lake Superior in 2019-2021 genotyped with GT-seq and the references used for genetic assignment
This data release contains sample information for a project using genotyping-in-thousands by sequencing (GT-seq) to identify to species early life coregonine fishes that were collected by the U.S. Geological Survey from Lake Superior in 2019-2021. Sample data are provided for both the larval and age-1 coregonines that underwent genetic identification and the reference fishes collected from numerous agencies between 2008-2023 that were used for assignment, including <i>Coregonus artedi</i>, <i>Coregonus hoyi</i>, <i>Coregonus kiyi</i>, <i>Coregonus clupeaformis</i>, <i>Prosopium cylindraceum</i>, and <i>Prosopium coulterii</i>. Sample information includes: the National Center for Biotechnology Institute BioProject IDs and accession numbers for the raw sequence data; internal IDs used for tissue and extract archiving at the Great Lakes Science Center's Molecular Ecology Laboratory; collection information; and biological data (where available) such as developmental stage, length (mm), and weight (g).
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "010:12" ] |
| contactPoint |
{ "fn": "Amanda S Ackiss", "@type": "vcard:Contact", "hasEmail": "mailto:aackiss@usgs.gov" } |
| description | This data release contains sample information for a project using genotyping-in-thousands by sequencing (GT-seq) to identify to species early life coregonine fishes that were collected by the U.S. Geological Survey from Lake Superior in 2019-2021. Sample data are provided for both the larval and age-1 coregonines that underwent genetic identification and the reference fishes collected from numerous agencies between 2008-2023 that were used for assignment, including <i>Coregonus artedi</i>, <i>Coregonus hoyi</i>, <i>Coregonus kiyi</i>, <i>Coregonus clupeaformis</i>, <i>Prosopium cylindraceum</i>, and <i>Prosopium coulterii</i>. Sample information includes: the National Center for Biotechnology Institute BioProject IDs and accession numbers for the raw sequence data; internal IDs used for tissue and extract archiving at the Great Lakes Science Center's Molecular Ecology Laboratory; collection information; and biological data (where available) such as developmental stage, length (mm), and weight (g). |
| distribution |
[ { "@type": "dcat:Distribution", "title": "Digital Data", "format": "XML", "accessURL": "https://doi.org/10.5066/P13W68YB", "mediaType": "application/http", "description": "Landing page for access to the data" }, { "@type": "dcat:Distribution", "title": "Original Metadata", "format": "XML", "mediaType": "text/xml", "description": "The metadata original format", "downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.69b475fcb66b018f981b88ea.xml" } ] |
| identifier | http://datainventory.doi.gov/id/dataset/USGS_69b475fcb66b018f981b88ea |
| keyword |
[ "Agawa Bay", "Alona Bay", "Apostle Islands", "Ashburton Bay", "Baptism River", "Bark Point", "Basswood Island", "Bear Island", "Bete Grise", "Big Bay", "Black Bay", "Black River Harbor", "Brule River", "Cascade River", "Cat Island", "Chicago Bay", "Coregonus", "Crisp Point", "DNA sequencing", "Encampment Island", "Fourteen Mile Point", "Fox River", "Freda", "French River", "GT-seq", "Gay", "Goulais Point", "Grand Island", "Grand Marais", "Grand Traverse Bay", "Great Lakes", "Heron Bay", "Huron Bay", "Jacobsville", "Lake Huron", "Lake Michigan", "Lake Superior", "Little Girls Point", "Maple Island", "Michigan Island", "North Twin Island", "Ontonagon", "Otter Island", "Outer Island", "Pancake Point", "Pie Island", "Poplar River", "Port Wing", "Raspberry Island", "Sand Bay", "Sand Island", "Shelter Bay", "Shot Point", "Stockton Island", "Sucker River", "Superior Entry", "Thunder Bay", "Thunder Cape", "Two Harbors", "USGS:69b475fcb66b018f981b88ea", "Wauswaugoning Bay", "Whitefish Bay", "Whitefish Point", "biota", "coregonine", "environment", "fish", "genetics", "genotyping-in-thousands by sequencing", "inlandWaters", "native species", "natural resource management", "population dynamics" ] |
| modified | 2026-06-22T00:00:00Z |
| publisher |
{ "name": "U.S. Geological Survey", "@type": "org:Organization" } |
| spatial | -92.6807, 43.2200, -79.9365, 49.0091 |
| theme |
[ "geospatial" ] |
| title | Early life coregonines collected from Lake Superior in 2019-2021 genotyped with GT-seq and the references used for genetic assignment |
