Data from: Pseudomolecule level Genome Assembly of Madsen Establishes a Reference for Pacific Northwest Winter Wheat
Resources
7 resources available
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Madsen_v1a1_functional_annotation.tsv.gz
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Madsen_v1a1_functional_annotation.gff3.gz
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Madsen_v1a1_annotation.gff3.gz
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Madsen_v1a1_pep.fasta.gz
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Madsen_v1a1_transcripts.fasta.gz
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Madsen_v1a1_cds.fasta.gz
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Madsen_v1a1_repeats.gff.gz
ZIP
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "005:18", "005:20" ] |
| contactPoint |
{ "fn": "See, Deven, R.", "hasEmail": "mailto:deven.see@usda.gov" } |
| description | <p dir="ltr">This dataset contains the pseudomolecule-scale genome assets for the hexaploid winter wheat cultivar 'Madsen' (<i>Triticum aestivum</i> L.). The deposit includes clean structural and functional gene coordinates (GFF3), corresponding sequence extractions (protein, CDS, and transcript FASTAs), a RepeatMasker-derived transposable element coordinate map (GFF), and a memory-optimized, curated functional annotation table (TSV) mapping gene models directly to their InterPro domains and Gene Ontology (GO) terms.</p> |
| distribution |
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| identifier | 10.15482/USDA.ADC/32592210.v1 |
| keyword |
[ "PacBio CCS", "Pacific Northwest", "Triticum aestivum", "gene annotation", "genome assembly", "winter wheat" ] |
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2026-08-07 |
| programCode |
[ "005:040" ] |
| publisher |
{ "name": "Agricultural Research Service", "@type": "org:Organization" } |
| temporal | 2023-07-17/2026-04-08 |
| title | Data from: Pseudomolecule level Genome Assembly of Madsen Establishes a Reference for Pacific Northwest Winter Wheat |
