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    • Data and scripts from: Revealing reassortment in influenza A viruses with TreeSort

    Metadata Updated: June 5, 2025

    This repository contains scripts and data to replicate the experiments fromMarkin, A., Macken, C.A., Baker, A.L., and Anderson, T.K., 2024. Revealing reassortment in influenza A viruses with TreeSort. bioRxiv 2024.11.15.623781; doi: https://doi.org/10.1101/2024.11.15.623781For the TreeSort tool and tutorial, see https://github.com/flu-crew/TreeSort.Unzip TreeSort-experiments.zip and see the nested directories and README files for instructions to replicate the study.- See 'simulations' directory for code and instructions to replicate the simulation study.- See 'IAV-reasortment-analysis' directory for data and code to replicate the analysis of reassortment rates and patterns among avian, swine, and human IAV lineages.Contact alexey.markn@usda.gov for questions.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons CCZero

    Downloads & Resources

    Dates

    Metadata Created Date January 1, 2025
    Metadata Updated Date June 5, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date January 1, 2025
    Metadata Updated Date June 5, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/28039040.v1
    Data Last Modified 2025-05-06
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id e83d1c2a-5ca5-4a9c-8336-ee7a873bdc87
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/publicdomain/zero/1.0/
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash b7764ddc7b8c3b67102e84947df5afec03d49c96c06b75c5fe0e31e92d3b5aef
    Source Schema Version 1.1
    Temporal 2024-11-01/2024-11-01

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