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Data and code from: Denitrification genes play minor roles in fumonisin production and virulence in <i>Fusarium verticillioides</i>

Published by Agricultural Research Service | Department of Agriculture | Catalog Last Checked: May 05, 2026 at 11:41 PM | Dataset Last Updated: January 23, 2026
This dataset contains all data and code necessary to reproduce the analyses, tables, and figures presented in the associated manuscript.The following files are included:Fumonisin_Bioassay_Rice_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the fumonisin bioassaySeedling_Disease_Assay_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the seedling growth and disease assayfumonisin_bioassay.Rmd: RMarkdown notebook with annotated R code needed to analyze the fumonisin bioassay datafumonisn_bioassay.html: rendered HTML output of the fumonisin bioassay notebookseedling_disease_assay.Rmd: RMarkdown notebook with annotated R code needed to analyze the seedling disease assay dataseedling_disease_assay.html: rendered HTML output of the seedling disease assay notebookdata_description.pdf: metadata document with column descriptions for each of the spreadsheetsThe following software and package versions were used:R version 4.3.1CmdStan version 2.33.1R packages:brms version 2.20.4cmdstanr version 0.5.3emmeans version 1.8.9tidybayes version 3.0.4bayestestR version 0.13.2

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Complete Metadata
@type dcat:Dataset
accessLevel public
bureauCode 
[
  "005:18"
]
contactPoint 
{
  "fn": "Read, Quentin D.",
  "hasEmail": "mailto:quentin.read@usda.gov"
}
description <p dir="ltr">This dataset contains all data and code necessary to reproduce the analyses, tables, and figures presented in the associated manuscript.</p><p dir="ltr">The following files are included:</p><ul><li>Fumonisin_Bioassay_Rice_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the fumonisin bioassay</li><li>Seedling_Disease_Assay_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the seedling growth and disease assay</li><li>fumonisin_bioassay.Rmd: RMarkdown notebook with annotated R code needed to analyze the fumonisin bioassay data</li><li>fumonisn_bioassay.html: rendered HTML output of the fumonisin bioassay notebook</li><li>seedling_disease_assay.Rmd: RMarkdown notebook with annotated R code needed to analyze the seedling disease assay data</li><li>seedling_disease_assay.html: rendered HTML output of the seedling disease assay notebook</li><li>data_description.pdf: metadata document with column descriptions for each of the spreadsheets</li></ul><p dir="ltr">The following software and package versions were used:</p><ul><li>R version 4.3.1</li><li>CmdStan version 2.33.1</li><li>R packages:</li><li><ul><li>brms version 2.20.4</li><li>cmdstanr version 0.5.3</li><li>emmeans version 1.8.9</li><li>tidybayes version 3.0.4</li><li>bayestestR version 0.13.2</li></ul></li></ul><p><br></p>
distribution 
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    "@type": "dcat:Distribution",
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    "downloadURL": "https://ndownloader.figshare.com/files/45435805"
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]
identifier 10.15482/USDA.ADC/25504900.v1
keyword 
[
  "Fusarium verticillioides",
  "denitrification",
  "disease",
  "fumonisin",
  "fungi",
  "nitrogen cycle",
  "software code",
  "virulence"
]
license https://creativecommons.org/publicdomain/zero/1.0/
modified 2026-01-23
programCode 
[
  "005:040"
]
publisher 
{
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}
spatial 
"{"type": "Point", "coordinates": [-83.35804, 33.92859]}"
temporal 2018-06-01/2019-06-30
title Data and code from: Denitrification genes play minor roles in fumonisin production and virulence in <i>Fusarium verticillioides</i>

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