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Cytoscape file of chemical networks
The maximum connectivity scores of pairwise chemical conditions summarized from Cmap results in a file with Cytoscape format (http://www.cytoscape.org/). The figures in the publication were generated from this file. The Cytoscape file is formed from importing the eight text file therein.
This dataset is associated with the following publication:
Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Ronglin Wang", "hasEmail": "mailto:wang.rong-lin@epa.gov" } |
| describedBy | https://pasteur.epa.gov/uploads/137/documents/CmapCytoscapeFigures.dictionary.xlsx |
| describedByType | application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
| description | The maximum connectivity scores of pairwise chemical conditions summarized from Cmap results in a file with Cytoscape format (http://www.cytoscape.org/). The figures in the publication were generated from this file. The Cytoscape file is formed from importing the eight text file therein. This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016). |
| distribution |
[ { "title": "CmapCytoScapeFigures.zip", "mediaType": "application/x-zip-compressed", "downloadURL": "https://pasteur.epa.gov/uploads/137/CmapCytoScapeFigures.zip" } ] |
| identifier | A-s1s7-137 |
| keyword |
[ "Connectivity mapping", "Gene expression profiles", "chemicals", "ecotoxicology", "exposure", "fish", "mechanisms of action", "networks", "toxicology" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2015-12-03 |
| programCode |
[ "020:095" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.1186/s12864-016-2406-y" ] |
| rights |
null
|
| title | Cytoscape file of chemical networks |
