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    • Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations

    Metadata Updated: September 2, 2025

    Colletotrichum shisoi is a fungal plant pathogen of Perilla frutescens, a mint species cultivated in some Asian countries but considered invasive in the United States. This dataset contains a new, highly contiguous genome sequence generated from the North American C. shisoi isolate FDWSRU 21-072, which has been proposed for use as a biological control agent of invasive P. frutescens. Long-read PacBio sequencing produced a nuclear genome assembly of 48 contigs and 86.9 Mb. Structural and functional gene annotations were generated with the FunAnnotate v1.8.16 pipeline. Repetitive contents were annotated using RepeatMasker v4.1.5. A complete mitochondrial genome was assembled using MitoHifi and Flye, and mitochondrial annotations were predicted using MFannot.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons CCZero

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    Dates

    Metadata Created Date September 2, 2025
    Metadata Updated Date September 2, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date September 2, 2025
    Metadata Updated Date September 2, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/28628477.v3
    Data Last Modified 2025-08-25
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id f0e3fed4-7031-4f32-81fa-b961e1a5e5e9
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/publicdomain/zero/1.0/
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 09734389a084c97fdf9afb567f60d2b62cd1b9b6bd0aea60c9b32dfbf377f9b1
    Source Schema Version 1.1
    Temporal 2025-03-19/2025-03-19

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