Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations
Resources
12 resources available
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Colletotrichum_shisoi.clusters.txt
TXT -
Colletotrichum_shisoi.cds-transcripts.fa
FA -
Colletotrichum_shisoi.gff3
GFF3 -
Colletotrichum_shisoi.proteins.fa
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Colletotrichum_shisoi.mrna-transcripts.fa
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Colletotrichum_shisoi.tbl
TBL -
Colletotrichum_shisoi.annotations.txt
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Colletotrichum_shisoi.contigs.fsa
FSA -
Colletotrichum_shisoi.scaffolds.fa
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Colletotrichum_shisoi_repeats.tbl
TBL -
Colletotrichum_shisoi_mitochondrial-genome.fasta
FASTA -
Colletotrichum_shisoi_mitochondrial-annotations.txt
TXT
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Fulcher, Michael, R.",
"hasEmail": "mailto:michael.fulcher@usda.gov"
}
|
| description | <p dir="ltr"><i>Colletotrichum shisoi</i> is a fungal plant pathogen of <i>Perilla frutescens</i>, a mint species cultivated in some Asian countries but considered invasive in the United States. This dataset contains a new, highly contiguous genome sequence generated from the North American <i>C. shisoi</i> isolate FDWSRU 21-072, which has been proposed for use as a biological control agent of invasive <i>P. frutescens</i>. Long-read PacBio sequencing produced a nuclear genome assembly of 48 contigs and 86.9 Mb. Structural and functional gene annotations were generated with the FunAnnotate v1.8.16 pipeline. Repetitive contents were annotated using RepeatMasker v4.1.5. A complete mitochondrial genome was assembled using MitoHifi and Flye, and mitochondrial annotations were predicted using MFannot.</p> |
| distribution |
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|
| identifier | 10.15482/USDA.ADC/28628477.v3 |
| keyword |
[
"Colletotrichum shisoi",
"Perilla fruescens",
"Perilla mint",
"fungus",
"genome",
"invasive",
"plant pathogen",
"weed"
]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2025-08-25 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2025-03-19/2025-03-19 |
| title | Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations |
