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    • Bombus huntii genome assembly scripts

    Metadata Updated: May 31, 2024

    The data in this repository is to provide the scripts used in the assembly of the Bombus huntii genome. It can be used to replicate the steps necessary to assemble the genome described in National Center for Biotechnology Information (NCBI) BioProject: PRJNA858880. This genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda.Dependenciesbamtools v2.5.1pigz v2.6any2fasta v0.4.2Singularity v3.8.3NCBI FCS adaptorHiFiAdapterFilt v3.0.1HiFiASM v0.19.3-r572BBmap v38.90KMC v3.2.1GenomeScope2 v2.0BLAST+ v2.0diamond v2.0.9minimap2 v2.22-r1101blobtoolkit2 v4.1.5blobblurb v1.2seqer v1.2yahs v1.1

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons Attribution Share-Alike

    Downloads & Resources

    Dates

    Metadata Created Date May 31, 2024
    Metadata Updated Date May 31, 2024

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date May 31, 2024
    Metadata Updated Date May 31, 2024
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/25762431.v1
    Data Last Modified 2024-05-14
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 8f0a11e2-6573-4947-994d-f9618974329e
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/licenses/by-sa/4.0/
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 4f87df4923c2a4e27c23df5080258f9fe3fe9f4fd98b8beb51dff4dab0631270
    Source Schema Version 1.1

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