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Federal
The GRIN-Global Project
Department of Agriculture —
GRIN-Global is an ongoing international collaborative project to develop shared and open-source applications that help manage plant germplasm collections. The... -
Federal
ComBase: A Web Resource for Quantitative and Predictive Food Microbiology
Department of Agriculture —
ComBase includes a systematically formatted database of quantified microbial responses to the food environment with more than 65,000 records, and is used for:... -
Federal
REAP (Resilient Economic Agricultural Practices)
Department of Agriculture —
REAP (Resilient Economic Agricultural Practices), formerly known as the Renewable Energy Assessment Project, was initially organized to quantitatively assess the... -
Federal
Data from: Vegetative Buffer Strips for Reducing Herbicide Transport in Runoff: Effects of Buffer Width, Vegetation, and Season
Department of Agriculture —
The effectiveness of vegetative buffer strips (VBS) for reducing herbicide transport has not been well documented for runoff prone soils. A multi‐year plot‐scale... -
Federal
Data from: Construction of a High-Density American Cranberry (Vaccinium macrocarpon Ait.) Composite Map Using Genotyping-by-Sequencing for Multi-pedigree Linkage Mapping
Department of Agriculture —
The American cranberry (Vaccinium macrocarpon Ait.) is a recently domesticated, economically important, fruit crop with limited molecular resources. New genetic... -
Federal
Data from: Phased Genotyping-by-Sequencing Enhances Analysis of Genetic Diversity and Reveals Divergent Copy Number Variants in Maize
Department of Agriculture —
High-throughput sequencing (HTS) of reduced representation genomic libraries has ushered in an era of genotyping-by-sequencing (GBS), where genome-wide genotype data... -
Federal
Data from: Datasets for transcriptomic analyses of maize leaves in response to Asian corn borer feeding and/or jasmonic acid
Department of Agriculture —
Corn (Zea mays) is one of the most widely grown crops throughout the world. However, many corn fields develop pest problems such as corn borers every year that... -
Federal
GRACEnet Soil Biology Network
Department of Agriculture —
To help enhance USA soil health, and ensure a robust living soil component that sustains essential functions for healthy plants, animals, and environment, and... -
Federal
Data from: Trends and sensitivities of low streamflow extremes to discharge timing and magnitude in Pacific Northwest mountain streams
Department of Agriculture —
Path analyses of historical streamflow data from the Pacific Northwest indicate that the precipitation amount has been the dominant control on the magnitude of low... -
Federal
Data from: Short- and long-term changes in sugarbeet (Beta vulgaris L.) gene expression due to postharvest jasmonic acid treatment - Data
Department of Agriculture —
Jasmonic acid is a natural plant hormone that induces native defense responses in plants. Sugarbeet (Beta vulgaris L.) root unigenes that were differentially... -
Federal
Hymenoptera Holotypes of the Smithsonian Institution
Department of Agriculture —
This website is a collaborative effort among several individuals. Michael Gates (USDA, Smithsonian Institution, Washington, DC) conceptualized the project. Robert... -
Federal
Agricultural Land Management Alternative with Numerical Assessment Criteria (ALMANAC) Simulation Model
Department of Agriculture —
The Agricultural Land Management Alternative with Numerical Assessment Criteria (ALMANAC) model simulates crop growth, competition, light interception by leaves,... -
Federal
Data from: The testes transcriptome of the New World Screwworm, Cochliomyia hominivorax
Department of Agriculture —
The New World Screwworm (NWS), Cochliomyia hominivorax, is a pest insect that is endemic to subtropical and tropical regions of the Western Hemisphere. The female... -
Federal
Data from: Infestation ratings database for soybean aphid on early-maturity wild soybean lines
Department of Agriculture —
Soybean aphid (Aphis glycines Matsumura; SA) is a major invasive pest of soybean [Glycine max (L.) Merr.] in northern production regions of North America. Although... -
Federal
Data from: The data of change in macrophage gene expression which [is] induced by perilipin 1 overexpression
Department of Agriculture —
The data presented are related to the research article entitled "Overexpression of Perilipin1 protects against atheroma progression in apolipoprotein E knockout... -
Federal
Data from: Bran data of total flavonoid and total phenolic contents, oxygen radical absorbance capacity, and profiles of proanthocyanidins and whole grain physical traits of 32 red and purple rice varieties
Department of Agriculture —
Phytochemicals in red and purple bran rice have potential health benefit to humans. The phytochemicals in brans of 32 red and purple global rice varieties are... -
Federal
ConvertCufflinksToExcel
Department of Agriculture —
This program converts several Cufflinks output files into easily readable Microsoft Excel tables using Apache's POI library. Only the "cuffdiff" output format... -
Federal
Data from: Effects of conifer treatments on soil nutrient availability and plant composition in sagebrush steppe
Department of Agriculture —
Conifer control in sagebrush steppe of the western United States causes various levels of site disturbance influencing vegetation recovery and resource availability.... -
Federal
Data from: Transcriptomic and bioinformatics analysis of the early time-course of the response to prostaglandin F2 alpha in the bovine corpus luteum
Department of Agriculture —
RNA expression analysis was performed on the corpus luteum tissue at five time points after prostaglandin F2 alpha treatment of midcycle cows using an Affymetrix... -
Federal
Code for: Understanding genetic architecture overcomes tradeoffs between seed quality and insect resistance
Department of Agriculture —
Linkage map creation and functions.R R code for creating linkage maps using R/qtl. Code is annotated. Additional resources can be found at: https://rqtl.org/tutorials/