Data Catalog

• Federal

  Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research

  Department of Agriculture —

  This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified...

  • TEXT
  • GZ
  • GZ
  • GZ
  • GZ
  • GZ
  • 36 more in dataset
• Federal

  Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i>

  Department of Agriculture —

  Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-...

  • GZ
  • GZ
  • GZ
  • GZ
  • GZ
  • XML
  • 1 more in dataset
• Federal

  Data from polishCLR: Example input genome assemblies

  Department of Agriculture —

  [ NOTE - Data files added 2022-11-01: Test long reads - test.1.filtered.bam_.gz Test short reads R1 - testpolish_R1.fastq Test short reads R2 - testpolish_R2.fastq...

  • fasta
  • fasta
  • fasta
  • fasta
  • fasta
  • fasta
  • 4 more in dataset
• Federal

  Evaluating accuracy of DNA pool construction based on white blood cell counts

  Department of Agriculture —

  Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal...

  • GZ
  • GZ
  • XLS
• Federal

  Agrilus planipennis community manual annotations

  Department of Agriculture —

  Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction....

  • GZ
• Federal

  Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7

  Department of Agriculture —

  Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening...

  • GZ
  • GZ
  • GZ
  • GZ
  • GZ
  • GZ
  • 224 more in dataset
• Federal

  Neodiprion lecontei Official Gene Set v1.1

  Department of Agriculture —

  This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome...

  • GZ
• Federal

  Data from: Estimation of pool construction and technical error

  Department of Agriculture —

  Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of...

  • GZ
  • GZ
  • GZ

You can also access this registry using the API (see API Docs).

Didn't find what you're looking for? Suggest a dataset here.