28 datasets found
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Federal
Data from: Genetic variation among 481 diverse soybean accessions recent views
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Data from: Estimation of pool construction and technical error recent views
Department of Agriculture —
Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of... -
Federal
Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research recent views
Department of Agriculture —
This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces recent views
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
Genes of viral origin in the Fopius arisanus genome recent views
Department of Agriculture —
Fopius arisanus (Sonan) is a braconid wasp (subfamily Opiinae) and biological control agent of a broad range of tephritid fruit fly species, including the global... -
Federal
Code from: Aspergillus flavus expression database (AFED), a comprehensive resource for Aspergillus flavus gene expression profiling recent views
Department of Agriculture —
Public RNA-Seq data was used to quantify gene expression abundance for 604 Aspergillus flavus samples from 52 experiments (bioprojects). Using abundance data, we... -
Federal
Data from: Genotypic characterization of the U.S. peanut core collection recent views
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Hyalella azteca Official Gene Set v1.0 recent views
Department of Agriculture —
The Hyalella azteca genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Hyalella azteca research... -
Federal
Data from: Agile Genetics: Single gene resolution without the fuss recent views
Department of Agriculture —
These files are 250bp Illumina MiSeq paired-end sequencing reads in fastq format. Libraries were prepared from DNA fragments amplified from tomato bulk (heterogenous)... -
Federal
Data from polishCLR: Example input genome assemblies recent views
Department of Agriculture —
[ NOTE - Data files added 2022-11-01: Test long reads - test.1.filtered.bam_.gz Test short reads R1 - testpolish_R1.fastq Test short reads R2 - testpolish_R2.fastq... -
Federal
Data from: Characterization of Adult Transcriptomes from the Omnivorous Lady Beetle Coleomegilla maculata Fed Pollen or Insect Egg Diet recent views
Department of Agriculture —
Expressed genes from two individual sibling specimens of Coleomegilla maculata (Coleoptera: Coccinellidae). One individual was fed only insect eggs as an adult, and... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping recent views
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Evaluating accuracy of DNA pool construction based on white blood cell counts recent views
Department of Agriculture —
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.) recent views
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,... -
Federal
Data from: Legacy genetics of Arachis cardenasii in the peanut crop - v2 recent views
Department of Agriculture —
[Note: This version supersedes version 1: https://doi.org/10.15482/USDA.ADC/1520889 Changes in version 2: A new Dataset was added - DataSet1-CardAlleles-iii.xlsx... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3 recent views
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Neodiprion lecontei Official Gene Set v1.1 recent views
Department of Agriculture —
This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome... -
Federal
Data from: Microbiota of maize kernels as influenced by Aspergillus flavus infection in susceptible and resistant inbreds recent views
Department of Agriculture —
This repository contains the code and data to reproduce the figures and analyses in the paper "Microbiota of maize kernels as influenced by Aspergillus flavus... -
Federal
Functional annotation for 15 diverse arthropod genomes recent views
Department of Agriculture —
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of... -
Federal
Halyomorpha halys Official Gene Set v1.2 recent views
Department of Agriculture —
This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1...
28 datasets found