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            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/51" xlink:actuate="onRequest">biological data</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/245" xlink:actuate="onRequest">OYSTER CONDITION INDICES</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/404" xlink:actuate="onRequest">WAVE DATA</gmx:Anchor>
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            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/42" xlink:actuate="onRequest">acoustic sensor</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/169" xlink:actuate="onRequest">anemometer</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/73" xlink:actuate="onRequest">pressure gauge</gmx:Anchor>
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            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="instrument">instrument</gmd:MD_KeywordTypeCode>
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                <gco:CharacterString>NODC INSTRUMENT TYPES THESAURUS</gco:CharacterString>
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            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/2" xlink:actuate="onRequest">biological</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/63" xlink:actuate="onRequest">in situ</gmx:Anchor>
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            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/2105" xlink:actuate="onRequest">University of Central Florida</gmx:Anchor>
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            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="dataCentre">dataCentre</gmd:MD_KeywordTypeCode>
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                <gco:CharacterString>NODC COLLECTING INSTITUTION NAMES THESAURUS</gco:CharacterString>
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                <gco:Decimal>28.9441793</gco:Decimal>
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                <gco:Decimal>28.9697033</gco:Decimal>
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              <gmd:extent>
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        <gco:CharacterString>Data description: This dataset includes observations collected during nine total experiments on five different reefs (Reference, R-2017, R-2016, R-2014, Degraded). Data are presented as timeseries (column vectors) in .txt files, with one file for each experiment. Experiments were conducted both above the canopy (“_High”) and within the canopy near the bed (“_Low”) for each live reef (Reference, R-2017, R-2016, R-2014), while only a single near-bed experiment was conducted at the Degraded reef. Below, we describe the contents of each file, including variable definitions (Table 2) and sample site characteristics. Additional information on canopy characteristics and solid volume fractions associated with each reef can be found in Table 1 and Figure 2, while Figure 1 shows the relative locations of each reef.</gco:CharacterString>
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      <gmd:lineage>
        <gmd:LI_Lineage>
          <gmd:processStep>
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              <gmd:description>
                <gco:CharacterString>Parameter or Variable: datetime (measured);
Units: N/A;
Observation Category: in situ;
Sampling Instrument: N/A;
Sampling and Analyzing Method: Datetime vector referenced to GMT time zone. Format:
DD-MMM-YYYY HH:mm:ss;
Data Quality Method: All data have been calculated from or averaged over 120s time series. Values in datetime represent the averaged or centered collection time.</gco:CharacterString>
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          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: WaterLevel_cm (measured);
Units: cm;
Observation Category: in situ;
Sampling Instrument: pressure gauge;
Sampling and Analyzing Method: Depth of water above the reef measured near the Vectrino profiler on the reef.
Absolute pressure measured with Onset U20L-04 pressure logger. Pressures converted to water depths after subtracting atmospheric pressure.</gco:CharacterString>
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          <gmd:processStep>
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                <gco:CharacterString>Parameter or Variable: WindSpeed_ms (measured);
Units: m/s;
Observation Category: in situ;
Sampling Instrument: anemometer;
Sampling and Analyzing Method: Wind speed measured in the channel.
Directly measured w/ Davis Wind Speed and Direction Smart Sensor (Onset, S-WCF-M003)</gco:CharacterString>
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          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: WaveHeight_cm (calculated);
Units: cm;
Observation Category: in situ;
Sampling Instrument: acoustic sensor;
Sampling and Analyzing Method: Significant wave height measured above the reef near the Vectrino Profiler. Surface fluctuations measured w/ Ocean Sensor Systems XB Pro

Significant wave height (H_s) was estimated from surface fluctuations using the methods of Dean and Dalrymple (1991), such that H_s=4σ_s, where σ_s is the standard deviation of surface measurements.</gco:CharacterString>
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            <gmi:LE_ProcessStep>
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                <gco:CharacterString>Parameter or Variable: UCH_cms (calculated);
Units: cm/s;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Streamwise (reef-parallel) depth-integrated channel velocity
Depth-integrated streamwise and cross-shore channel velocities were calculated using offshore velocity profiles (Nortek Aquadopp HR Profiler) measured within 50cm of the bed.;
Data Quality Method: Measurements with integrated channel speeds (U_CH^2+V_CH^2 )^(1/2)&lt; 7.5cm/s were removed from the dataset.</gco:CharacterString>
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          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: VCH_cms (calculated);
Units: cm/s;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Cross-shore depth-integrated channel velocity
Depth-integrated streamwise and cross-shore channel velocities were calculated using offshore velocity profiles (Aquadopp HR Profiler) measured within 50cm of the bed.;
Data Quality Method: Measurements with integrated channel speeds (U_CH^2+V_CH^2 )^(1/2)&lt; 7.5cm/s were removed from the dataset.</gco:CharacterString>
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          <gmd:processStep>
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                <gco:CharacterString>Parameter or Variable: UR_cms (measured);
Units: cm/s;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Streamwise (reef-parallel) current velocity measured on the reef.
Streamwise and cross-shore reef velocities are measured with the Nortek Vectrino Profiler. Observations represent point measurements collected in the most accurate portion of the velocity profile, located at 2cm or 9.5cm above the bed for “_Low” and “_High” experiments, respectively.;
Data Quality Method: Measurements with reef velocities (U_R^2+V_R^2 )^(1/2)&lt; 2mm/s were removed from the dataset.</gco:CharacterString>
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          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: VR_cms (measured);
Units: cm/s;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Cross-shore current velocity measured on the reef
Streamwise and cross-shore reef velocities are measured with the Nortek Vectrino Profiler. Observations represent point measurements collected in the most accurate portion of the velocity profile, located at 2cm or 9.5cm above the bed for “_Low” and “_High” experiments, respectively.;
Data Quality Method: Measurements with reef velocities (U_R^2+V_R^2 )^(1/2)&lt; 2mm/s were removed from the dataset.</gco:CharacterString>
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            </gmi:LE_ProcessStep>
          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: wp2o_m2s2 (calculated);
Units: m2/s2;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Vertical turbulent energy measured on the reef.
Vertical turbulent and wave energy were estimated from velocity fluctuations measured by the Nortek Vectrino Profiler (sample rate: 100Hz). The contributions of waves and turbulence were separated using the phase method, as described in Bricker and Monismith (2007). Observations represent point measurements collected in the most accurate portion of the velocity profile, located at 2cm or 9.5cm above the bed for “_Low” and “_High” experiments, respectively.;
Data Quality Method: Measurements where the energy  contributions of waves were greater than those of turbulence were removed from the dataset due to potential bias in phase decomposition.</gco:CharacterString>
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            </gmi:LE_ProcessStep>
          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: ww2o_m2s2 (calculated);
Units: m2/s2;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Vertical wave energy measured on the reef
Vertical turbulent and wave energy were estimated from velocity fluctuations measured by the Vectrino Profiler (sample rate: 100Hz). The contributions of waves and turbulence were separated using the phase method, as described in Bricker and Monismith (2007). Observations represent point measurements collected in the most accurate portion of the velocity profile, located at 2cm or 9.5cm above the bed for “_Low” and “_High” experiments, respectively.;
Data Quality Method: Measurements where the energy  contributions of waves were greater than those of turbulence were removed from the dataset due to potential bias in phase decomposition.</gco:CharacterString>
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            </gmi:LE_ProcessStep>
          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: ep_m2s3 (calculated);
Units: m2/s3;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Turbulent kinetic energy dissipation (ϵ) measured on each reef
Estimated from velocity fluctuations measured by the Vectrino Profiler (sample rate: 100Hz). Dissipation was estimated using a wave-corrected second order structure function as outlined in Scannel et al. (2017). Observations represent point measurements collected in the most accurate portion of the velocity profile, located at 2cm or 9.5cm above the bed for “_Low” and “_High” experiments, respectively.;
Data Quality Method: Fits with adjusted R2 values less than 80% were rejected as erroneous (replaced w/ NaN).</gco:CharacterString>
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          <gmd:processStep>
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                <gco:CharacterString>Parameter or Variable: P_m2s3 (calculated);
Units: m2/s3;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Estimated from velocity fluctuations measured by the Vectrino Profiler (sample rate: 100Hz). Shear production was estimated from wave removed estimates of the Reynolds stress tensor and direct measurements of the velocity shear. Observations represent point measurements collected in the most accurate portion of the velocity profile, located at 2cm or 9.5cm above the bed for “_Low” and “_High” experiments, respectively.;
Data Quality Method: Production estimates were limited to velocity profiles where current speeds increased with distance above the bed. All estimates made with atypical velocity profiles were replaced with NaN.</gco:CharacterString>
              </gmd:description>
            </gmi:LE_ProcessStep>
          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: us_ms (calculated);
Units: m/s;
Observation Category: in situ;
Sampling Instrument: Acoustic Doppler Velocimeter (ADV);
Sampling and Analyzing Method: Turbulent velocity scales estimated for flows on each reef. Estimated from velocity fluctuations measured by the Vectrino Profiler (sample rate: 100Hz). Turbulent velocity scales were estimated from wave removed estimates of the Reynolds stress. This parameter was used for scaling in order to compare conditions across sample reefs</gco:CharacterString>
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        <gmi:MI_Instrument id="inst_be37">
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                <gco:CharacterString>Acoustic Doppler Velocimeter (ADV)</gco:CharacterString>
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            <gco:CharacterString>Acoustic Doppler Velocimeter (ADV)</gco:CharacterString>
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          <gmi:description>
            <gco:CharacterString>High-resolution acoustic instruments to study rapid 3D velocity fluctuations

ADVs have three or more focused beams to measure with high sampling rates in a small point. They work by sending out a short acoustic pulse from the transmit element. When the pulse travels through the focus point for the receiver beams, the echo is recorded in each of the acoustic receiver elements. The echo is then processed to find the Doppler shift, the scaling is adjusted with the measured speed of sound in the liquid (hence the temperature measurement), and the velocity vector is recorded or transmitted to a PC at a rapid rate.
http://www.nortek-as.com/en/products/velocimeters</gco:CharacterString>
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      <gmi:instrument>
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          <gmi:type>
            <gco:CharacterString>acoustic sensor</gco:CharacterString>
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          <gmi:description>
            <gco:CharacterString>generic instrument type for sensing sound in the water column

Use acoustic sensor for a variety of types of observations, including acoustic tomography, whale and other marine mammal sound detection, etc.

Do not use acoustic sensor for instrument type when the thing being measured is distance to seafloor: use echo sounder or sidescan sonar as appropriate.</gco:CharacterString>
          </gmi:description>
        </gmi:MI_Instrument>
      </gmi:instrument>
      <gmi:instrument>
        <gmi:MI_Instrument id="inst_be46">
          <gmi:identifier>
            <gmd:MD_Identifier>
              <gmd:code>
                <gco:CharacterString>anemometer</gco:CharacterString>
              </gmd:code>
            </gmd:MD_Identifier>
          </gmi:identifier>
          <gmi:type>
            <gco:CharacterString>anemometer</gco:CharacterString>
          </gmi:type>
          <gmi:description>
            <gco:CharacterString>measures wind speed

An anemometer is an instrument that measures wind speed. Note that an aerovane (insttypes_id 175) is an anemometer which has a tail and a propeller to measure the speed and direction of the wind.</gco:CharacterString>
          </gmi:description>
        </gmi:MI_Instrument>
      </gmi:instrument>
      <gmi:instrument>
        <gmi:MI_Instrument id="inst_bea6">
          <gmi:identifier>
            <gmd:MD_Identifier>
              <gmd:code>
                <gco:CharacterString>pressure gauge</gco:CharacterString>
              </gmd:code>
            </gmd:MD_Identifier>
          </gmi:identifier>
          <gmi:type>
            <gco:CharacterString>pressure gauge</gco:CharacterString>
          </gmi:type>
          <gmi:description>
            <gco:CharacterString>pressure gauge

pressure gauge used to measure water pressure for use in NODC File
Alias F017</gco:CharacterString>
          </gmi:description>
        </gmi:MI_Instrument>
      </gmi:instrument>
    </gmi:MI_AcquisitionInformation>
  </gmi:acquisitionInformation>
</gmi:MI_Metadata>