{
  "accessLevel": "public",
  "bureauCode": [
    "010:12"
  ],
  "contactPoint": {
    "@type": "vcard:Contact",
    "fn": "Erik Hofmeister",
    "hasEmail": "mailto:ehofmeister@usgs.gov"
  },
  "description": "The data set contains paired-end, 100 nucleotide long RNA sequencing reads for each sample. Raw sequencing reads ranged from 18-30million reads per sample. Quality trimmed reads were mapped to the Zebra Finch reference genome with an average of 79.0-80.8% mapping rate, corresponding to 18,618 Ensembl gene IDs. Of these, 14,114 genes averaged at least 5 mapped reads across all samples and were utilized for differential expression (DE) analyses. DE analyzed two ways: as pairwise comparisons between treatments to identify specific genes with DEseq2 and as a time course grouping genes into expression paths with EBSeqHMM.",
  "distribution": [
    {
      "@type": "dcat:Distribution",
      "accessURL": "https://dx.doi.org/10.5066/F7G44NHF",
      "description": "Landing page for access to the data",
      "format": "XML",
      "mediaType": "application/http",
      "title": "Digital Data"
    },
    {
      "@type": "dcat:Distribution",
      "description": "The metadata original format",
      "downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.592ee3ade4b092b266f13e74.xml",
      "format": "XML",
      "mediaType": "text/xml",
      "title": "Original Metadata"
    }
  ],
  "identifier": "http://datainventory.doi.gov/id/dataset/USGS_592ee3ade4b092b266f13e74",
  "keyword": [
    "RNAseq",
    "Transcriptome",
    "USGS:592ee3ade4b092b266f13e74",
    "West Nile virus",
    "virus"
  ],
  "modified": "2020-10-06T00:00:00Z",
  "publisher": {
    "@type": "org:Organization",
    "name": "U.S. Geological Survey"
  },
  "theme": [
    "geospatial"
  ],
  "title": "Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function"
}