{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["005:18"], "contactPoint": {"fn": "Geib, Scott", "hasEmail": "mailto:scott.geib@usda.gov"}, "description": "<p>This dataset presents the <em>Neodiprion</em> Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome assembly Nlec1.1 (<a href=\"https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/\">https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/</a>).</p>\n<p>This dataset is now obsolete - a new genome assembly, iyNeoleco1.1 (<a href=\"https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1\">https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1</a>) has been produced by the Ag100Pest project, with annotations from NCBI's RefSeq resource. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Neodiprion lecontei Official Gene Set v1.1.</p> <p>File Name: neolec_OGSv1.1.tar.gz</p><p>Resource Description: The files in this directory are derived from Neolec OGSv1.0 (not publicly released). The gff3 file was updated to assembly GCA_001263575.2 (<a href=\"https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2\">https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2</a>) using CrossMap v0.2.8 (<a href=\"http://crossmap.sourceforge.net/\">http://crossmap.sourceforge.net/</a>).</p>\n<p>neolec_OGSv1.1.gff3: Neolec OGSv1.0, updated to GCA_001263575.2\nneolec_OGSv1.1_removed.tsv: Features from Neolec OGSv1.0 that were removed in the update\nneolec_OGSv1.1_summary.tsv: The % of individual features from Neolec OGSv1.0 that were retained in the update\nNlec_v1_transcripts_renamed_alphabetized.fasta: Transcript sequences derived from Neolec OGSv1.0\nNlec_v1_proteins_renamed_alphabetized.fasta: Protein sequences derived from Neolec OGSv1.0\n</p></li></ul><p></p>", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/44528075", "format": "gz", "mediaType": "application/x-gzip", "title": "neolec_OGSv1.1.tar.gz"}], "identifier": "10.15482/USDA.ADC/1527886", "keyword": ["ARS", "Neodiprion lecontei", "arthropods", "data.gov", "i5k"], "license": "https://creativecommons.org/licenses/by-sa/4.0/", "modified": "2025-11-21", "programCode": ["005:040"], "publisher": {"@type": "org:Organization", "name": "Agricultural Research Service"}, "spatial": "{\"type\": \"Point\", \"coordinates\": [-84.5037, 38.0406]}", "temporal": "2018-05-01/2018-05-01", "title": "Neodiprion lecontei Official Gene Set v1.1"}