{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["005:18"], "contactPoint": {"fn": "Fulcher, Michael, R.", "hasEmail": "mailto:michael.fulcher@usda.gov"}, "description": "<p dir=\"ltr\"><i>Colletotrichum shisoi</i> is a fungal plant pathogen of <i>Perilla frutescens</i>, a mint species cultivated in some Asian countries but considered invasive in the United States. This dataset contains a new, highly contiguous genome sequence generated from the North American <i>C. shisoi</i> isolate FDWSRU 21-072, which has been proposed for use as a biological control agent of invasive <i>P. frutescens</i>. Long-read PacBio sequencing produced a nuclear genome assembly of 48 contigs and 86.9 Mb. Structural and functional gene annotations were generated with the FunAnnotate v1.8.16 pipeline. Repetitive contents were annotated using RepeatMasker v4.1.5. A complete mitochondrial genome was assembled using MitoHifi and Flye, and mitochondrial annotations were predicted using MFannot.</p>", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131343", "format": "txt", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.clusters.txt"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131346", "format": "fa", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.cds-transcripts.fa"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131352", "format": "gff3", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.gff3"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131355", "format": "fa", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.proteins.fa"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131361", "format": "fa", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.mrna-transcripts.fa"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131364", "format": "tbl", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.tbl"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131367", "format": "txt", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.annotations.txt"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131373", "format": "fsa", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.contigs.fsa"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/53131376", "format": "fa", "mediaType": "text/plain", "title": "Colletotrichum_shisoi.scaffolds.fa"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/57110222", "format": "tbl", "mediaType": "text/plain", "title": "Colletotrichum_shisoi_repeats.tbl"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/57110231", "format": "fasta", "mediaType": "text/plain", "title": "Colletotrichum_shisoi_mitochondrial-genome.fasta"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/57110234", "format": "txt", "mediaType": "text/plain", "title": "Colletotrichum_shisoi_mitochondrial-annotations.txt"}], "identifier": "10.15482/USDA.ADC/28628477.v3", "keyword": ["Colletotrichum shisoi", "Perilla fruescens", "Perilla mint", "fungus", "genome", "invasive", "plant pathogen", "weed"], "license": "https://creativecommons.org/publicdomain/zero/1.0/", "modified": "2025-08-25", "programCode": ["005:040"], "publisher": {"@type": "org:Organization", "name": "Agricultural Research Service"}, "temporal": "2025-03-19/2025-03-19", "title": "Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations"}