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        <gco:CharacterString>As part of the 2014 Chesapeake Bay Watershed Agreement (CBP, 2014), all Bay States and the District of Columbia have committed to improving the condition of the Bay, which includes a goal to achieve sustainable fisheries. One outcome under that broad goal is improved effectiveness of fish habitat conservation and preservation efforts. In support of that outcome, the U.S. Geological Survey Eastern Ecological Science Center (USGS-EESC) and the National Oceanic and Atmospheric Association’s National Centers for Coastal Ocean Science (NOAA-NCCOS) are actively developing datasets, methods, and analyses to conduct fish habitat assessments in the Chesapeake Bay watershed, guided by recommendations from a regional stakeholder workshop held by the Chesapeake Bay Program’s (CBP) Fish Habitat Action Team (FHAT) in 2018 (Hunt et al., 2018). The joint USGS and NOAA team has been collaborating on methods for conducting inland and estuarine assessments and exploring whether a seamless headwater to estuary assessment could be developed. The goals of this assessment are to benefit both State and Federal fisheries managers, help advance fisheries science, and provide beneficial information for the public. While past national and regional assessments (e.g. the National Fish Habitat Partnership National Assessment (Greene et al., 2015; Esselman et al., 2011)) treated inland and estuarine fish habitat conditions separately due to differences in environments, GIS data representation, and data availability, a seamless habitat assessment could be of value for a broad range of stakeholders as many fish species, several of which are invasive or under federal jurisdiction, use habitats across both inland and estuarine waters. This project developed a pilot framework, explored and tested methods necessary for a finer scale, seamless assessment across both inland and estuarine waters, and demonstrated its use.

Although there was interest by the CBP FHAT for the generation of a Baywide fish habitat assessment that spanned tidal salt, tidal fresh, warm non-tidal and cold non-tidal waters (Hunt et al., 2018), there are a myriad of implementation details and considerations around conducting a Baywide assessment across all four of these general habitat areas. Therefore, the practical need to conduct a tributary-specific pilot assessment arose. At the beginning of this pilot process, members of the FHAT were presented with a decision matrix to choose a study basin using factors such as data availability and tributary size. FHAT members chose the Patuxent River basin, which has been relatively well sampled and studied. Several spatial frameworks were considered before selection of an inclusive gridded framework for summary and analysis that represented inland drainage networks and landscape influences as well as estuarine bathymetry. A suite of landscape and in-water stressor variables were summarized into the framework and were largely generalized over time. In order to assess the viability of the framework, we chose to use species distribution modeling (Kiser et al., 2022) for each of the species to test the framework’s ability to predict habitat use of non-tidal resident, estuarine resident, and migratory species. Tessellated darter (Etheostoma olmstedi), American eel (Anguilla rostrata), and white perch (Morone americana) were chosen as illustrative fish species based on data availability, and differences in life history and habitat use. A nested modeling approach, which involved successive model runs at multiple scales (1000m, 100m, and 10m raster grids) was developed to examine differences in variable importance at different spatial scales and to enhance modeling efficiency. For white perch, a complementary modeling analysis was performed for variables available only in estuarine waters. For all testing, an ensemble modeling approach was conducted, using a suite of potential statistical techniques driven by model strength and variable predictive power.</gco:CharacterString>
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        <gco:CharacterString>Funding Agency: Funding to support USGS efforts provided by the US Department of the Interior (DOI), USGS, Ecosystems Mission Area, Priority Ecosystem Studies, Chesapeake Bay Science Studies program and by the Eastern Ecological Science Center</gco:CharacterString>
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      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/116" xlink:actuate="onRequest">DISSOLVED OXYGEN</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/476" xlink:actuate="onRequest">HABITAT - BENTHIC</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/307" xlink:actuate="onRequest">SALINITY</gmx:Anchor>
          </gmd:keyword>
          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/502" xlink:actuate="onRequest">SUBSTRATE DESCRIPTION</gmx:Anchor>
          </gmd:keyword>
          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/373" xlink:actuate="onRequest">WATER TEMPERATURE</gmx:Anchor>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
          </gmd:type>
          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>NODC DATA TYPES THESAURUS</gco:CharacterString>
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              <gmd:date gco:nilReason="inapplicable" />
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        </gmd:MD_Keywords>
      </gmd:descriptiveKeywords>
      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/205" xlink:actuate="onRequest">Multi-parameter Inorganic Carbon Analyzer (MICA)</gmx:Anchor>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="instrument">instrument</gmd:MD_KeywordTypeCode>
          </gmd:type>
          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>NODC INSTRUMENT TYPES THESAURUS</gco:CharacterString>
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              <gmd:date gco:nilReason="inapplicable" />
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        </gmd:MD_Keywords>
      </gmd:descriptiveKeywords>
      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/63" xlink:actuate="onRequest">in situ</gmx:Anchor>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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              <gmd:title>
                <gco:CharacterString>NODC OBSERVATION TYPES THESAURUS</gco:CharacterString>
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      </gmd:descriptiveKeywords>
      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
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            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1466" xlink:actuate="onRequest">NOAA National Centers for Coastal Ocean Science</gmx:Anchor>
          </gmd:keyword>
          <gmd:keyword>
            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/242" xlink:actuate="onRequest">Tetra Tech, Inc.</gmx:Anchor>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="dataCentre">dataCentre</gmd:MD_KeywordTypeCode>
          </gmd:type>
          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>NODC COLLECTING INSTITUTION NAMES THESAURUS</gco:CharacterString>
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              <gmd:date gco:nilReason="inapplicable" />
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        </gmd:MD_Keywords>
      </gmd:descriptiveKeywords>
      <gmd:descriptiveKeywords>
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            <gmx:Anchor xlink:href="https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1466" xlink:actuate="onRequest">NOAA National Centers for Coastal Ocean Science</gmx:Anchor>
          </gmd:keyword>
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            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="dataCentre">dataCentre</gmd:MD_KeywordTypeCode>
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          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>NODC SUBMITTING INSTITUTION NAMES THESAURUS</gco:CharacterString>
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              <gmd:date gco:nilReason="inapplicable" />
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        <gmd:MD_Keywords>
          <gmd:keyword>
            <gco:CharacterString>oceanography</gco:CharacterString>
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            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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                <gco:CharacterString>WMO_CategoryCode</gco:CharacterString>
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                  <gmd:date>
                    <gco:Date>2012-09-15</gco:Date>
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                  <gmd:dateType>
                    <gmd:CI_DateTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode" codeListValue="publication">publication</gmd:CI_DateTypeCode>
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                </gmd:CI_Date>
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      </gmd:descriptiveKeywords>
      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
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            <gmx:Anchor xlink:href="https://cmr.earthdata.nasa.gov/kms/concept/4eb54191-305b-4852-9759-da55053ead81" xlink:actuate="onRequest">DOC/NOAA/NOS/NCCOS &gt; National Centers for Coastal Ocean Science, National Ocean Service, NOAA, U.S. Department of Commerce</gmx:Anchor>
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          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="dataCentre">dataCentre</gmd:MD_KeywordTypeCode>
          </gmd:type>
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                <gco:CharacterString>Global Change Master Directory (GCMD) Data Center Keywords</gco:CharacterString>
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                  <gmd:date>
                    <gco:Date>2026</gco:Date>
                  </gmd:date>
                  <gmd:dateType>
                    <gmd:CI_DateTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode" codeListValue="revision">revision</gmd:CI_DateTypeCode>
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                </gmd:CI_Date>
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                        <gmd:CI_Address>
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                            <gco:CharacterString>Greenbelt</gco:CharacterString>
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                            <gco:CharacterString>MD</gco:CharacterString>
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                      </gmd:address>
                      <gmd:onlineResource>
                        <gmd:CI_OnlineResource>
                          <gmd:linkage>
                            <gmd:URL>https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords</gmd:URL>
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                            <gco:CharacterString>HTTPS</gco:CharacterString>
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                            <gco:CharacterString>GCMD Keyword Forum Page</gco:CharacterString>
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                            <gco:CharacterString>Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords</gco:CharacterString>
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                            <gmd:CI_OnLineFunctionCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode" codeListValue="information">information</gmd:CI_OnLineFunctionCode>
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                        </gmd:CI_OnlineResource>
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                    <gmd:CI_RoleCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#CI_RoleCode" codeListValue="custodian">custodian</gmd:CI_RoleCode>
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            <gco:CharacterString>Chesapeake Bay Program</gco:CharacterString>
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            <gco:CharacterString>PRISM Climate Group, Oregon State University</gco:CharacterString>
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            <gco:CharacterString>U.S. Geological Survey (USGS) Coastal National Elevation Database (CoNED)</gco:CharacterString>
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            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="project">project</gmd:MD_KeywordTypeCode>
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              <gmd:title>
                <gco:CharacterString>Provider Project Names</gco:CharacterString>
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      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
          <gmd:keyword>
            <gmx:Anchor xlink:href="https://cmr.earthdata.nasa.gov/kms/concept/fbec5145-79e6-4ed0-a804-6228aa6daba5" xlink:actuate="onRequest">EARTH SCIENCE &gt; BIOLOGICAL CLASSIFICATION</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://cmr.earthdata.nasa.gov/kms/concept/09a78997-581b-4d1b-ae71-b2b3f96ef719" xlink:actuate="onRequest">EARTH SCIENCE &gt; BIOSPHERE &gt; ECOSYSTEMS &gt; MARINE ECOSYSTEMS &gt; BENTHIC</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://cmr.earthdata.nasa.gov/kms/concept/90aa8838-79bd-4b28-b518-8217e863c385" xlink:actuate="onRequest">EARTH SCIENCE &gt; OCEANS &gt; OCEAN CHEMISTRY &gt; OXYGEN</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://cmr.earthdata.nasa.gov/kms/concept/46206e8c-8def-406f-9e62-da4e74633a58" xlink:actuate="onRequest">EARTH SCIENCE &gt; OCEANS &gt; OCEAN TEMPERATURE &gt; WATER TEMPERATURE</gmx:Anchor>
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          <gmd:keyword>
            <gmx:Anchor xlink:href="https://cmr.earthdata.nasa.gov/kms/concept/7e95b5fc-1d58-431a-af36-948b29fa870d" xlink:actuate="onRequest">EARTH SCIENCE &gt; OCEANS &gt; SALINITY/DENSITY &gt; SALINITY</gmx:Anchor>
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              <gmd:title>
                <gco:CharacterString>Global Change Master Directory (GCMD) Science Keywords</gco:CharacterString>
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                    <gco:Date>2026</gco:Date>
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                    <gmd:CI_DateTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode" codeListValue="revision">revision</gmd:CI_DateTypeCode>
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                            <gco:CharacterString>Greenbelt</gco:CharacterString>
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                      </gmd:address>
                      <gmd:onlineResource>
                        <gmd:CI_OnlineResource>
                          <gmd:linkage>
                            <gmd:URL>https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords</gmd:URL>
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                          <gmd:protocol>
                            <gco:CharacterString>HTTPS</gco:CharacterString>
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                            <gco:CharacterString>GCMD Keyword Forum Page</gco:CharacterString>
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                    <gmd:CI_RoleCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#CI_RoleCode" codeListValue="custodian">custodian</gmd:CI_RoleCode>
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              <gmd:title>
                <gco:CharacterString>NCCOS Research Areas</gco:CharacterString>
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                <gco:CharacterString>NCCOS Research Data Types</gco:CharacterString>
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                <gco:CharacterString>Global Change Master Directory (GCMD) Instrument Keywords</gco:CharacterString>
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All data were standardized to the same spatial coordinate reference system (CONUS Albers NAD83, EPSG 6350). Environmental data were compiled from a wide range of sources, leveraging a metadata catalog (USGS Chesapeake Bay Studies - Data Catalog | U.S. Geological Survey) assembled by the team specifically for Chesapeake Bay fish habitat assessments. The team attempted to collect the most recent data available, though various data sources extended over the last 30 years. Because many variables were not collected consistently over that time period, we choose to “flatten” the data over time and conduct the analysis as a snapshot in time rather than an assessment of change in habitat over time. In order to test the framework and the modeling approach, a broad suite of predictor data for the watershed was included in the assessment to include variables of different spatial formats and to allow for a data-driven selection of factors based on data mining and statistical analysis, rather than a predetermined selection by the team members. With this in mind, our team took into consideration many environmentally driven factors previously used in fish habitat assessments (e.g. Esselman et al., 2011; Green et al., 2015, Maloney et al., 2022, Monaco et al., 1998) as well as a variety of topographic and DEM based variables used to analyze finer upstream hydrodynamic processes.</gco:CharacterString>
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Observation Category: in situ and model outputt;
Sampling Instrument: The instruments generally used by the Continuous Monitoring Program are YSI 6600 and YSI EXO sondes. While some meters are ancho;
Sampling and Analyzing Method: Field biologists visit sites by small boat, research vessel, pier, bridge, or shoreline (Maryland Department of Natural Resources “Eyes on the Bay” Water Quality Monitoring Program). Measurements are taken with an autonomous data instrument and samples are gathered for analysis (https://eyesonthebay.dnr.maryland.gov/contmon/ContinuousMonitoring.cfm). Data from the Continuous Monitoring and Water Quality Mapping is then taken into an interpolator specifically designed to interpolate water quality metrics throughout the bay.;
Data Quality Method: Automated data quality assurance checks are performed and reviewed by field biologists. Data analysts review data for additional error correction/data flagging (https://eyesonthebay.dnr.maryland.gov/eyesonthebay/DataProcess.cfm). The Chesapeake Bay and tidal Tributary River Interpolator that was used to interpolate the water quality data is a standalone application that interpolates water quality sample concentrations on the surface or throughout the 3D volume of the Bay and tidal tributaries ((Bahner et al., 2001).</gco:CharacterString>
              </gmd:description>
            </gmi:LE_ProcessStep>
          </gmd:processStep>
          <gmd:processStep>
            <gmi:LE_ProcessStep>
              <gmd:description>
                <gco:CharacterString>Parameter or Variable: Benthic Index of Biotic Integrity (measured and calculated) (measured);
Units: Unitless (values 1-5 describing overall benthic health in that location);
Observation Category: multiple;
Sampling Instrument: multiple;
Sampling and Analyzing Method: Fixed Station Replicate Averaged Benthic Index of Biotic Integrity Value from the Maryland Chesapeake Bay Program for Benthic Monitoring was aggregated and joined with their corresponding sampling event record in R giving each IBI score spatial and temporal data (https://baybenthos.versar.com/data.htm). This was joined to the nearest 10m raster cell in ArcGIS Pro version 3.2.1 and aggregated bilinearly to reach resolutions of 100m and 1000m.;
Data Quality Method: Data quality control was done in R to assess that each station correctly correlated with the associated corresponding MDBE_IBI.txt file.</gco:CharacterString>
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            </gmi:LE_ProcessStep>
          </gmd:processStep>
        </gmd:LI_Lineage>
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    </gmd:DQ_DataQuality>
  </gmd:dataQualityInfo>
  <gmd:metadataMaintenance>
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        <gmd:MD_MaintenanceFrequencyCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_MaintenanceFrequencyCode" codeListValue="asNeeded">asNeeded</gmd:MD_MaintenanceFrequencyCode>
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        <gco:CharacterString>Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.</gco:CharacterString>
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      <gmd:contact>
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          <gmd:organisationName>
            <gco:CharacterString>NOAA National Centers for Environmental Information</gco:CharacterString>
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  <gmi:acquisitionInformation>
    <gmi:MI_AcquisitionInformation id="AMS">
      <gmi:instrument>
        <gmi:MI_Instrument id="inst_be22">
          <gmi:identifier>
            <gmd:MD_Identifier>
              <gmd:code>
                <gco:CharacterString>Multi-parameter Inorganic Carbon Analyzer (MICA)</gco:CharacterString>
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          <gmi:type>
            <gco:CharacterString>Multi-parameter Inorganic Carbon Analyzer (MICA)</gco:CharacterString>
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          <gmi:description>
            <gco:CharacterString>automated Multi-parameter Inorganic Carbon Analyzer (MICA) for autonomous measurement of pH, carbon dioxide (CO2) and dissolved inorganic carbon (DIC)

The automated Multi-parameter Inorganic Carbon Analyzer (MICA) is used to simultaneously measure underway surface seawater pH, fCO2, and TCO2.</gco:CharacterString>
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