FRD_CPS_SDMs eng UTF8 dataset service Bob Simons NOAA NMFS SWFSC Environmental Research Division +1 831-420-3666 99 Pacific St, Suite 255A Monterey CA 93940 USA bob.simons@noaa.gov pointOfContact 2022-09-03 ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) 3 column 185 0.10000000000000003 row 180 0.09999999999999999 temporal 8488 86450.901378579 area CCS Species Distribution Models for coastal pelagic species 2022-09-03 creation coastwatch.pfeg.noaa.gov FRD_CPS_SDMs NOAA/SWFSC/FRD,NOAA/SWFSC/ERD,UCSC,NOAA/NWFSC,PSMFC https://repository.library.noaa.gov/view/noaa/37600 information web browser Background Information Background information from the source information originator Forage species such as Pacific sardine, northern anchovy, and market squid are critical ecological links between the planktonic food web and higher trophic levels in the California Current System, as well as supporting valuable fisheries. Environmental variability drives large fluctuations in their abundance and distribution. This dataset includes the outputs of Species Distribution Models (SDMs) for 6 key forage species, combining multiple survey datasets with environmental fields from a high-resolution Regional Ocean Modeling System (ROMS) developed at the University of California - Santa Cruz, and the Copernicus-Globcolour interpolated surface chlorophyll product (https://doi.org/10.48670/moi-00100). The sardine and anchovy SDMs also included predictors indexing stock biomass (MacCall et al. 2016; Kuriyama et al. 2020). As temporally continuous salinity fields are not available from the UCSC ROMS, we included a measure of the distance to the nearest major river (mean > 50,000 CFS discharge) in the herring SDM, to capture to association of this species with estuaries. The 6 species represented are Pacific sardine (Sardinops sagax), northern anchovy (Engraulis mordax), market squid (Doryteuthis opalescens), Pacific herring (Clupea pallasii), Pacific (chub) mackerel (Scomber japonicus), and Jack mackerel (Trachurus symmetricus). Results from two different SDMs are shown: Generalized Additive Models and Boosted Regression Trees, and both models predict the probability of occurrence of each species. We used data from the NOAA Southwest Fisheries Science Center Coastal Pelagic Species and Columbia River Predator (Emmett et al. 2006) trawl surveys to train all SDMs, with the exception of market squid, where juvenile salmon survey data were used instead (see Chasco et al. 2022 for description of these data). More details on preliminary versions of the sardine and anchovy SDMs are available in Muhling et al. (2019). An additional manuscript in preparation will include description of up-to-date data, methods, and model structure. Until this is published, we strongly recommend contacting Barbara Muhling (Barbara.Muhling@noaa.gov) before working with this dataset, to ensure complete understanding of the details and caveats. Funding for this work was provided by NOAA Office of Sustainable Fisheries, and the NOAA Climate and Fisheries Adaptation program. References Chasco, B. E., Hunsicker, M. E., Jacobson, K. C., Welch, O. T., Morgan, C. A., Muhling, B. A., & Harding, J. A. (2022). Evidence of Temperature-Driven Shifts in Market Squid Doryteuthis opalescens Densities and Distribution in the California Current Ecosystem. Marine and Coastal Fisheries, 14(1), e10190. Emmett, R. L., Krutzikowsky, G. K., & Bentley, P. (2006). Abundance and distribution of pelagic piscivorous fishes in the Columbia River plume during spring/early summer 1998-2003: relationship to oceanographic conditions, forage fishes, and juvenile salmonids. Progress in Oceanography, 68(1), 1-26. Kuriyama, P. T., Zwolinski, J. P., Hill, K. T., & Crone, P. R. (2020). Assessment of the Pacific sardine resource in 2020 for US management in 2020-2021. NOAA Technical Memorandum NOAA-TM-NMFS-SWFSC-628 MacCall, A. D., Sydeman, W. J., Davison, P. C., & Thayer, J. A. (2016). Recent collapse of northern anchovy biomass off California. Fisheries Research, 175, 87-94. Muhling, B., Brodie, S., Snodgrass, O., Tommasi, D., Dewar, H., Childers, J., Jacox, M. Edwards, C. A., Xu, Y. & Snyder, S. (2019). Dynamic habitat use of albacore and their primary prey species in the California Current System. CalCOFI Reports 60: 1-15. NOAA/SWFSC/FRD,NOAA/SWFSC/ERD,UCSC,NOAA/NWFSC,PSMFC https://repository.library.noaa.gov/view/noaa/37600 information web browser Background Information Background information from the source information pointOfContact earth science atmosphere ocean biosphere biology environment theme NOAA/SWFSC/FRD,NOAA/SWFSC/ERD,UCSC,NOAA/NWFSC,PSMFC project time latitude longitude theme CF Standard Name Table v70 The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. NOAA/SWFSC/FRD,NOAA/SWFSC/ERD,UCSC,NOAA/NWFSC,PSMFC largerWorkCitation project Unidata Common Data Model Grid largerWorkCitation project eng geoscientificInformation 1 -133.9 -115.5 30.1 48.0 seconds 1997-10-01T00:00:00Z 2020-12-31T00:00:00Z CCS Species Distribution Models for coastal pelagic species 2022-09-03 creation NOAA/SWFSC/FRD,NOAA/SWFSC/ERD,UCSC,NOAA/NWFSC,PSMFC https://repository.library.noaa.gov/view/noaa/37600 information web browser Background Information Background information from the source information originator Forage species such as Pacific sardine, northern anchovy, and market squid are critical ecological links between the planktonic food web and higher trophic levels in the California Current System, as well as supporting valuable fisheries. Environmental variability drives large fluctuations in their abundance and distribution. This dataset includes the outputs of Species Distribution Models (SDMs) for 6 key forage species, combining multiple survey datasets with environmental fields from a high-resolution Regional Ocean Modeling System (ROMS) developed at the University of California - Santa Cruz, and the Copernicus-Globcolour interpolated surface chlorophyll product (https://doi.org/10.48670/moi-00100). The sardine and anchovy SDMs also included predictors indexing stock biomass (MacCall et al. 2016; Kuriyama et al. 2020). As temporally continuous salinity fields are not available from the UCSC ROMS, we included a measure of the distance to the nearest major river (mean > 50,000 CFS discharge) in the herring SDM, to capture to association of this species with estuaries. The 6 species represented are Pacific sardine (Sardinops sagax), northern anchovy (Engraulis mordax), market squid (Doryteuthis opalescens), Pacific herring (Clupea pallasii), Pacific (chub) mackerel (Scomber japonicus), and Jack mackerel (Trachurus symmetricus). Results from two different SDMs are shown: Generalized Additive Models and Boosted Regression Trees, and both models predict the probability of occurrence of each species. We used data from the NOAA Southwest Fisheries Science Center Coastal Pelagic Species and Columbia River Predator (Emmett et al. 2006) trawl surveys to train all SDMs, with the exception of market squid, where juvenile salmon survey data were used instead (see Chasco et al. 2022 for description of these data). More details on preliminary versions of the sardine and anchovy SDMs are available in Muhling et al. (2019). An additional manuscript in preparation will include description of up-to-date data, methods, and model structure. Until this is published, we strongly recommend contacting Barbara Muhling (Barbara.Muhling@noaa.gov) before working with this dataset, to ensure complete understanding of the details and caveats. Funding for this work was provided by NOAA Office of Sustainable Fisheries, and the NOAA Climate and Fisheries Adaptation program. References Chasco, B. E., Hunsicker, M. E., Jacobson, K. C., Welch, O. T., Morgan, C. A., Muhling, B. A., & Harding, J. A. (2022). Evidence of Temperature-Driven Shifts in Market Squid Doryteuthis opalescens Densities and Distribution in the California Current Ecosystem. Marine and Coastal Fisheries, 14(1), e10190. Emmett, R. L., Krutzikowsky, G. K., & Bentley, P. (2006). Abundance and distribution of pelagic piscivorous fishes in the Columbia River plume during spring/early summer 1998-2003: relationship to oceanographic conditions, forage fishes, and juvenile salmonids. Progress in Oceanography, 68(1), 1-26. Kuriyama, P. T., Zwolinski, J. P., Hill, K. T., & Crone, P. R. (2020). Assessment of the Pacific sardine resource in 2020 for US management in 2020-2021. NOAA Technical Memorandum NOAA-TM-NMFS-SWFSC-628 MacCall, A. D., Sydeman, W. J., Davison, P. C., & Thayer, J. A. (2016). Recent collapse of northern anchovy biomass off California. Fisheries Research, 175, 87-94. Muhling, B., Brodie, S., Snodgrass, O., Tommasi, D., Dewar, H., Childers, J., Jacox, M. Edwards, C. A., Xu, Y. & Snyder, S. (2019). Dynamic habitat use of albacore and their primary prey species in the California Current System. CalCOFI Reports 60: 1-15. ERDDAP griddap 1 -133.9 -115.5 30.1 48.0 seconds 1997-10-01T00:00:00Z 2020-12-31T00:00:00Z tight ERDDAPgriddapDatasetQueryAndAccess https://coastwatch.pfeg.noaa.gov/erddap/griddap/FRD_CPS_SDMs ERDDAP:griddap ERDDAP-griddap ERDDAP's griddap service (a flavor of OPeNDAP) for gridded data. Add different extensions (e.g., .html, .graph, .das, .dds) to the base URL for different purposes. download CCS Species Distribution Models for coastal pelagic species 2022-09-03 creation NOAA/SWFSC/FRD,NOAA/SWFSC/ERD,UCSC,NOAA/NWFSC,PSMFC https://repository.library.noaa.gov/view/noaa/37600 information web browser Background Information Background information from the source information originator Forage species such as Pacific sardine, northern anchovy, and market squid are critical ecological links between the planktonic food web and higher trophic levels in the California Current System, as well as supporting valuable fisheries. Environmental variability drives large fluctuations in their abundance and distribution. This dataset includes the outputs of Species Distribution Models (SDMs) for 6 key forage species, combining multiple survey datasets with environmental fields from a high-resolution Regional Ocean Modeling System (ROMS) developed at the University of California - Santa Cruz, and the Copernicus-Globcolour interpolated surface chlorophyll product (https://doi.org/10.48670/moi-00100). The sardine and anchovy SDMs also included predictors indexing stock biomass (MacCall et al. 2016; Kuriyama et al. 2020). As temporally continuous salinity fields are not available from the UCSC ROMS, we included a measure of the distance to the nearest major river (mean > 50,000 CFS discharge) in the herring SDM, to capture to association of this species with estuaries. The 6 species represented are Pacific sardine (Sardinops sagax), northern anchovy (Engraulis mordax), market squid (Doryteuthis opalescens), Pacific herring (Clupea pallasii), Pacific (chub) mackerel (Scomber japonicus), and Jack mackerel (Trachurus symmetricus). Results from two different SDMs are shown: Generalized Additive Models and Boosted Regression Trees, and both models predict the probability of occurrence of each species. We used data from the NOAA Southwest Fisheries Science Center Coastal Pelagic Species and Columbia River Predator (Emmett et al. 2006) trawl surveys to train all SDMs, with the exception of market squid, where juvenile salmon survey data were used instead (see Chasco et al. 2022 for description of these data). More details on preliminary versions of the sardine and anchovy SDMs are available in Muhling et al. (2019). An additional manuscript in preparation will include description of up-to-date data, methods, and model structure. Until this is published, we strongly recommend contacting Barbara Muhling (Barbara.Muhling@noaa.gov) before working with this dataset, to ensure complete understanding of the details and caveats. Funding for this work was provided by NOAA Office of Sustainable Fisheries, and the NOAA Climate and Fisheries Adaptation program. References Chasco, B. E., Hunsicker, M. E., Jacobson, K. C., Welch, O. T., Morgan, C. A., Muhling, B. A., & Harding, J. A. (2022). Evidence of Temperature-Driven Shifts in Market Squid Doryteuthis opalescens Densities and Distribution in the California Current Ecosystem. Marine and Coastal Fisheries, 14(1), e10190. Emmett, R. L., Krutzikowsky, G. K., & Bentley, P. (2006). Abundance and distribution of pelagic piscivorous fishes in the Columbia River plume during spring/early summer 1998-2003: relationship to oceanographic conditions, forage fishes, and juvenile salmonids. Progress in Oceanography, 68(1), 1-26. Kuriyama, P. T., Zwolinski, J. P., Hill, K. T., & Crone, P. R. (2020). Assessment of the Pacific sardine resource in 2020 for US management in 2020-2021. NOAA Technical Memorandum NOAA-TM-NMFS-SWFSC-628 MacCall, A. D., Sydeman, W. J., Davison, P. C., & Thayer, J. A. (2016). Recent collapse of northern anchovy biomass off California. Fisheries Research, 175, 87-94. Muhling, B., Brodie, S., Snodgrass, O., Tommasi, D., Dewar, H., Childers, J., Jacox, M. Edwards, C. A., Xu, Y. & Snyder, S. (2019). Dynamic habitat use of albacore and their primary prey species in the California Current System. CalCOFI Reports 60: 1-15. OPeNDAP 1 -133.9 -115.5 30.1 48.0 seconds 1997-10-01T00:00:00Z 2020-12-31T00:00:00Z tight OPeNDAPDatasetQueryAndAccess https://coastwatch.pfeg.noaa.gov/erddap/griddap/FRD_CPS_SDMs OPeNDAP:OPeNDAP OPeNDAP An OPeNDAP service for gridded data. Add different extensions (e.g., .html, .das, .dds) to the base URL for different purposes. download physicalMeasurement anchovy_BRT float Predicted probability of northern anchovy occurrence from BRT anchovy_GAM float Predicted probability of northern anchovy occurrence from GAM PacificMackerel_BRT float Predicted probability of Pacific mackerel occurrence from BRT PacificMackerel_GAM float Predicted probability of Pacific mackerel occurrence from GAM herring_BRT float Predicted probability of Pacific herring occurrence from BRT herring_GAM float Predicted probability of Pacific herring occurrence from GAM jackMackerel_BRT float Predicted probability of Jack mackerel occurrence from BRT jackMackerel_GAM float Predicted probability of Jack mackerel occurrence from GAM sardine_BRT float Predicted probability of Pacific sardine occurrence from BRT sardine_GAM float Predicted probability of Pacific sardine occurrence from GAM marketSquid_BRT float Predicted probability of market squid occurrence from BRT marketSquid_GAM float Predicted probability of market squid occurrence from GAM Bob Simons NOAA NMFS SWFSC Environmental Research Division +1 831-420-3666 99 Pacific St, Suite 255A Monterey CA 93940 USA bob.simons@noaa.gov distributor OPeNDAP DAP/2.0 https://coastwatch.pfeg.noaa.gov/erddap/griddap/FRD_CPS_SDMs.html order Data Subset Form ERDDAP's version of the OPeNDAP .html web page for this dataset. Specify a subset of the dataset and download the data via OPeNDAP or in many different file types. download https://coastwatch.pfeg.noaa.gov/erddap/griddap/FRD_CPS_SDMs.graph order Make-A-Graph Form ERDDAP's Make-A-Graph .html web page for this dataset. Create an image with a map or graph of a subset of the data. mapDigital This record was created from dataset metadata by ERDDAP Version 2.19