Phenotypes_raw_sunflower_pericarp.xlsx\u00a0
Six tabs containing phenotypic data for sunflower pericarp, oil content, and banded sunflower moth damage measured in recombinant inbred lines (RIL) and sunflower association mapping (SAM) population. The first 3 tabs contain phenotypes for RIL population and the last 3 tabs contain phenotypes from the SAM population.\u00a0
RIL_strength_thickness: \u2018geno\u2019 contains the names of the RIL, \u2018year\u2019 is the year evaluated, \u2018rep\u2019 is the repetition, \u2018plant\u2019 is the plant sampled, \u2018pericarp_strength\u2019 and \u2018pericarp_thickness\u2019 are the traits measured.\u00a0
RIL_oil: \u2018geno\u2019 contains the names of the RIL, \u2018year\u2019 is the year evaluated, \u2018rep\u2019 is the repetition, and \u2018oil\u2019 is the measured oil content.\u00a0
RIL_BSM: \u2018geno\u2019 contains the names of the RIL, \u2018year\u2019 is the year evaluated, \u2018seed\u2019 the number of seed imaged, \u2018empty\u2019 the number of seeds with no achene, \u2018moth_damage\u2019 the number of seed with moth damage, and \u2018percent_moth_damaged\u2019 is the percentage of non-empty seed with moth damage.\u00a0
SAM_thickness_2016: \u2018SAM\u2019 contains the name of the SAM line. The other column names denote the head and achene number from which pericarp thickness below was measured in 2016. For example, \u2018head1_achene1\u2019 means the first head and first achene from the first head, and \u2018head1_achene2\u2019 is the second achene sampled from the first head.\u00a0\u00a0
SAM_thickness_2015: \u2018SAM\u2019 contains the name of the SAM line. The other column names denote the head and achene number from which pericarp thickness below was measured in 2015. For example, \u2018head1_achene1\u2019 means the first head and first achene from the first head, and \u2018head1_achene2\u2019 is the second achene sampled from the first head.\u00a0\u00a0
SAM_oil: \u2018SAM\u2019 contains the name of the SAM line, \u2018year\u2019 is the year evaluated, \u2018plant\u2019 is the plant sampled and \u2018oil\u2019 is the measured oil content.\u00a0
HA467xPI170415 Starting Genotypes\u00a0
SNP prior to filtering for the RIL population developed from HA467 \u00d7 PI170415. Row names are SNP names and contain chromosome number and physical position. Column names contain the RIL names. Last two columns contain parental genotypes. Homozygotes are coded as 0|0 and 1|1 and heterozygous calls as 1|0 or 0|1.\u00a0\u00a0
Oil_linkageMap.xls & Pericarp_linkageMap.xls\u00a0
Input for IciMapping for oil content and pericarp traits measured in the RIL population. The purpose of including these files is to list the SNP used in the linkage map. This information can be found in Chromosome and Genotype tabs. An explanation of the other tabs can be found in IciMapping manual: https://isbreedingen.caas.cn/software/qtllcimapping/294607.htm\u00a0
*This work used resources of the Center for Computationally Assisted Science and Technology (CCAST) at North Dakota State University, which were made possible in part by NSF MRI Award No. 2019077.