gov.noaa.nodc:0254274 eng utf8 dataset NOAA National Centers for Environmental Information ncei.info@noaa.gov https://www.ncei.noaa.gov/contact HTTPS NOAA Contact Information Information for contacts at NCEI. information custodian 2025-09-26T19:12:25Z ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) Towards predicting coral fate with a molecular biotechnology+machine-learning approach (NCEI Accession 0254274) 2022-06-29 publication 2022-06-21 creation NOAA National Centers for Environmental Information gov.noaa.nodc:0254274 NCEI Archive Management System 0254274 NOAA National Centers for Environmental Information ncei.info@noaa.gov https://www.ncei.noaa.gov/contact HTTPS NCEI Contact Information Information for contacts at NCEI. information publisher Anderson B. Mayfield NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) andersonblairmayfield@gmail.com https://www.aoml.noaa.gov/ HTTPS NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) website Institution web page information resourceProvider NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) https://www.aoml.noaa.gov/ HTTPS NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) website Institution web page information resourceProvider Anderson Mayfield NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) andersonblairmayfield@gmail.com https://www.aoml.noaa.gov/ HTTPS NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) website Institution web page information principalInvestigator Mayfield, Anderson B. NOAA Atlantic Oceanographic and Meteorological Laboratory https://www.aoml.noaa.gov/ HTTPS NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) website Institution web page information author University of Miami (UM) http://www.miami.edu/ HTTP University of Miami (UM) website Institution web page information contributor tableDigital Given the widespread decline of coral reefs across the globe on account of climate change-induced rises in seawater temperature, a series of temperature-focused models have been generated to predict when and where bleaching events may occur (e.g., NOAA’s Coral Reef Watch). Although such algorithms are adept at forecasting the onset of periods of severe bleaching in many parts of the world, they suffer from poor predictive capacity in areas featuring high numbers of corals that have either adapted or acclimatized to life in marginalized environments, such as stress-hardened corals of the Florida Keys. In these areas, it may instead be superior to use physiological data from the corals themselves to make predictions about coral bleaching susceptibility. To that end, both field and laboratory analyses were undertaken with the massive Caribbean reef-builder Orbicella faveolata whereby, after elucidating the cellular pathways underlying both bleaching and high-temperature tolerance in diverse genotypes ex situ, the protein profiles of tagged field colonies were tracked across seasons. Neural networks trained with proteomic data from the laboratory specimens were then tested using proteomic data from bleaching-susceptible and bleaching-resistant field colonies, and the resulting artificial intelligence (AI) was capable of predicting with a high degree of confidence whether a coral colony would bleach. This ‘Omics+AI approach could be of potential use in delineating O. faveolata climate resilience elsewhere in the Florida Keys, and perhaps beyond. This dataset includes raw files from the mass spectrometer, as well as "distilled" mass spectrometry data that can be analyzed and interpreted by those with access to a personal computer and the Microsoft Office suite. This dataset is available to the public for a wide variety of uses including scientific research and analysis. Funding Agency: US DOC; National Oceanic and Atmospheric Administration completed historicalArchive NOAA National Centers for Environmental Information ncei.info@noaa.gov https://www.ncei.noaa.gov/contact HTTPS NCEI Contact Information Information for contacts at NCEI. information pointOfContact asNeeded https://www.ncei.noaa.gov/access/metadata/landing-page/bin/gfx?id=gov.noaa.nodc:0254274 Preview graphic PNG 0254274 NCEI ACCESSION NUMBER 2022-04-20 publication biological data CORAL ORGANIC CHEMICALS theme NODC DATA TYPES THESAURUS mass spectrometer instrument NODC INSTRUMENT TYPES THESAURUS biological laboratory analyses theme NODC OBSERVATION TYPES THESAURUS University of Miami dataCentre NODC COLLECTING INSTITUTION NAMES THESAURUS NOAA Atlantic Oceanographic and Meteorological Laboratory dataCentre NODC SUBMITTING INSTITUTION NAMES THESAURUS Coastal Waters of Florida Florida Keys National Marine Sanctuary North Atlantic Ocean place NODC SEA AREA NAMES THESAURUS oceanography theme WMO_CategoryCode 2012-09-15 publication DOC/NOAA/OAR/AOML > Atlantic Oceanographic and Meteorological Laboratory, OAR, NOAA, U.S. Department of Commerce dataCentre Global Change Master Directory (GCMD) Data Center Keywords 2026 revision 24 Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA) Greenbelt MD https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords HTTPS GCMD Keyword Forum Page Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords information custodian NOAA 'Omics Initiative project Provider Project Names Genetic Data Sets > Proteomic Analysis theme CoRIS Discovery Thesaurus EARTH SCIENCE > Biosphere > Zoology > Corals > Bleaching > Bleaching Resistance EARTH SCIENCE > Biosphere > Zoology > Corals > Coral Diseases > Bleaching EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Molecular Genetic Analysis > Proteomic Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Scleractinia (stony corals) EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs EARTH SCIENCE > Oceans > Marine Biology > Coral theme CoRIS Theme Thesaurus EARTH SCIENCE > BIOLOGICAL CLASSIFICATION EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY EARTH SCIENCE > SOLID EARTH > GEOMORPHIC LANDFORMS/PROCESSES > COASTAL LANDFORMS > CORAL REEFS theme Global Change Master Directory (GCMD) Science Keywords 2026 revision 24 Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA) Greenbelt MD https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords HTTPS GCMD Keyword Forum Page Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords information custodian 'Omics + AI approach Orbicella faveolata protein concentrations theme Provider Keywords MASS SPECTROMETERS > MASS SPECTROMETERS instrument Global Change Master Directory (GCMD) Instrument Keywords 2026 revision 24 Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA) Greenbelt MD https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords HTTPS GCMD Keyword Forum Page Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords information custodian R/V GBN1 platform Provider Platform Names COUNTRY/TERRITORY > United States of America > Florida > Monroe County > Cheeca Rocks (24N080W0009) COUNTRY/TERRITORY > United States of America > Florida > Monroe County > Conch Reef (24N080W0011) COUNTRY/TERRITORY > United States of America > Florida > Monroe County > Florida Keys (24N081W0007) OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Florida Keys (24N081W0007) OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Upper Florida Keys > Cheeca Rocks (24N080W0009) OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Upper Florida Keys > Conch Reef (24N080W0011) place CoRIS Place Thesaurus OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN > GULF OF AMERICA OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN > GULF OF MEXICO place Global Change Master Directory (GCMD) Location Keywords 2026 revision 24 Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA) Greenbelt MD https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords HTTPS GCMD Keyword Forum Page Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords information custodian Crocker Reef Little Conch The Rocks place Provider Place Names 7C8LY6 Send2NCEI Submission Package ID accessLevel: public otherRestrictions Cite as: Mayfield, Anderson B. (2022). Towards predicting coral fate with a molecular biotechnology+machine-learning approach (NCEI Accession 0254274). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0254274. Accessed [date]. Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives. otherRestrictions Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose. Mayfield, A.B. Towards predicting coral fate with a molecular biotechnology + machine-learning approach (under review). 2022 publication AB Mayfield US DOC; NOAA; OAR; Atlantic Oceanographic and Meteorological Laboratory (AOML) anderson.mayfield@noaa.gov author documentDigital crossReference Mayfield, Anderson B. (2021). Images of coral colonies sampled at four time points in 2019: July (prior to bleaching), August (during a coral bleaching event), October (during the post-bleaching recovery period), and December (a cool-water period in which corals had fully recovered from bleaching) (NCEI Accession 0243645). NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0243645. 2021-12-08 publication NOAA National Centers for Environmental Information gov.noaa.nodc:0243645 https://www.ncei.noaa.gov/archive/accession/0243645 HTTPS https://www.ncei.noaa.gov/archive/accession/0243645 In situ images of the sampled coral colonies whose proteomes were analyzed in this dataset. information Mayfield, Anderson B. Atlantic Oceanographic and Meteorological Laboratory (AOML) https://www.aoml.noaa.gov/ HTTPS NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) website Institution web page information author NOAA National Centers for Environmental Information (NCEI) publisher tableDigital crossReference collection Mayfield, Anderson B. (2021). Differential proteomic analysis of the massive star coral Orbicella faveolata exposed to experimentally elevated temperatures (NCEI Accession 0242879). NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0242879. 2021-12-06 publication NOAA National Centers for Environmental Information gov.noaa.nodc:0242879 https://www.ncei.noaa.gov/archive/accession/0242879 HTTPS https://www.ncei.noaa.gov/archive/accession/0242879 Contains a glossary of terms and field-specific jargon pertaining to mass spectrometry-based analyses of proteins. information Mayfield, Anderson B. NOAA Atlantic Oceanographic and Meteorological Laboratory https://www.aoml.noaa.gov/ HTTPS NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) website Institution web page information author NOAA National Centers for Environmental Information (NCEI) publisher tableDigital crossReference collection eng; USA utf8 environment oceans biota -80.61573 -80.50205 24.89742 24.95375 2019-07-10 2019-12-04 NOAA National Centers for Environmental Information +1-301-713-3277 ncei.info@noaa.gov pointOfContact In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media. Contact NCEI for other distribution options and instructions. CSV Excel Word fasta raw mzML mzTab 23875.06 https://www.ncei.noaa.gov/archive/accession/0254274 HTTPS Web browser NCEI Dataset Landing Page Navigate directly to the URL for a descriptive web page with download links. information https://www.ncei.noaa.gov/archive/accession/oas/254274 HTTPS Web browser Descriptive Information Navigate directly to the URL for a descriptive web page with download links. information https://www.ncei.noaa.gov/archive/accession/download/254274 HTTPS Web browser HTTPS Navigate directly to the URL for data access and direct download. download ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0204/0254274/ FTP Any FTP client FTP These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). download dataset NCEI Accession 0254274 v1.1 was published. 2022-06-29T22:10:50Z NCEI Accession 0254274 v1.1 publication https://www.ncei.noaa.gov/archive/accession/0254274/1.1 HTTPS NCEI Accession 0254274 v1.1 published 2022-06-29T22:10:50Z download dataset Parameter or Variable: protein concentrations (measured); Units: relative levels (ratios to control); Observation Category: laboratory analysis; Sampling Instrument: mass spectrometer; Sampling and Analyzing Method: Coral proteins were extracted, labeled (iTRAQ), separated by nano-liquid chromatography, and sequenced by mass spectrometry.; Data Quality Method: Protein quantity was determined using BCA assays (against BSA standards), and quality was determined by SDS-PAGE (Phastgel System). asNeeded Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness. NOAA National Centers for Environmental Information custodian mass spectrometer mass spectrometer Instrument that measure the massess and relative concentrations of atoms and molecules