{"accessLevel": "public", "bureauCode": ["010:12"], "contactPoint": {"@type": "vcard:Contact", "fn": "Erik Hofmeister", "hasEmail": "mailto:ehofmeister@usgs.gov"}, "description": "The data set contains paired-end, 100 nucleotide long RNA sequencing reads for each sample. Raw sequencing reads ranged from 18-30million reads per sample. Quality trimmed reads were mapped to the Zebra Finch reference genome with an average of 79.0-80.8% mapping rate, corresponding to 18,618 Ensembl gene IDs. Of these, 14,114 genes averaged at least 5 mapped reads across all samples and were utilized for differential expression (DE) analyses. DE analyzed two ways: as pairwise comparisons between treatments to identify specific genes with DEseq2 and as a time course grouping genes into expression paths with EBSeqHMM.", "distribution": [{"@type": "dcat:Distribution", "accessURL": "https://dx.doi.org/10.5066/F7G44NHF", "description": "Landing page for access to the data", "format": "XML", "mediaType": "application/http", "title": "Digital Data"}, {"@type": "dcat:Distribution", "description": "The metadata original format", "downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.592ee3ade4b092b266f13e74.xml", "format": "XML", "mediaType": "text/xml", "title": "Original Metadata"}], "identifier": "http://datainventory.doi.gov/id/dataset/USGS_592ee3ade4b092b266f13e74", "keyword": ["RNAseq", "Transcriptome", "USGS:592ee3ade4b092b266f13e74", "West Nile virus", "virus"], "modified": "2020-10-06T00:00:00Z", "publisher": {"@type": "org:Organization", "name": "U.S. Geological Survey"}, "theme": ["geospatial"], "title": "Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function"}